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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33090.1 | AT | aminopeptidase M1 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0043171 | GO-bp | peptide catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004177 | GO-mf | aminopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008237 | GO-mf | metallopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008237 | GO-mf | metallopeptidase activity | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0042277 | GO-mf | peptide binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0070006 | GO-mf | metalloaminopeptidase activity | EnsemblGenomes | N/A | IEA |
| KOG1046 | KOG | Puromycin-sensitive aminopeptidase and related aminopeptidases | JGI | N/A | IEA |
| PTHR11533 | Panther | PROTEASE M1 ZINC METALLOPROTEASE | JGI | N/A | IEA |
| PTHR11533:SF97 | Panther | JGI | N/A | IEA | |
| PF01433 | PFAM | Peptidase family M1 | JGI | N/A | IEA |
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Glyma.06g053800 not represented in the dataset |
Glyma.06g053800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.04g053300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g05650 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g053800.1 sequence-type=CDS polypeptide=Glyma.06g053800.1.p locus=Glyma.06g053800 ID=Glyma.06g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCAGTTCAAAGGAAAGCCTCGTCTTCCCAAATTCGCCGTCCCCAAACGCTACGACCTTAGGCTCAAGCCCGACCTCGTCGCGCACCGTTTCGCAGGTTCCGTCGCCGTCCACCTCGACATCGTCCCCGCCACCTCTTTCATTGTTCTCAATGCCGCCGAACTCTCCGTCAGCAACGACGCTGTTTCATTCACCAACCAAGACTCCTCCAAGGTTATTAAACCTTCACGAGTTGAGTTGTTTGAAAATGATGAGATTCTGGTTTTGGAGTTCCCAGAGGAATTACCTATTGGGTTCGGTGTCTTGTCCATTCGCTTTGAAGGAATCTTGAATGATAGAATGAAAGGCTTCTACCGAAGTACCTATGAGCACAATGGTGAGAAGAAGACTATGGCAGTTACACAGTTTGCACCGGCTGATGCCAGGCGATGCTTTCCTTGTTGGGATGAACCTTCTTGCAAGGCTTCTTTCAAGATCACATTGGATGTGCCTTCAGAGCTTGTTGCTCTTTCCAACATGCCAATTGTTGAAGAAATAACAGATGGAAATCTCAAAACAGTTTCATATCAAGAATCACCAATCATGTCTACATATTTGGTTGCGGTTGTTGTTGGTTTGTTTGATTATGTGGAAGATCATACCTCAGATGGGGTCAAAGTCCGGGTGTATTGTCAAGTTGGTAAGGCAAACCAGGGGAAATTTGCACTTGATGTAGCTGTGAAATCTTTGGAACTATACAAGGGTTACTTTGCCACTCCCTACTCACTGCCAAAATTGGATATGATTGCAATCCCTGATTTCGCTGCTGGAGCCATGGAGAACTATGGTCTGGTTACATATCGGGAGACTGCTTTGCTATATGATGACCAGCATTCTGCTGCTGCAAATAAACAGAGGGTTGCAACTGTAGTAGCTCATGAACTAGCACACCAATGGTTTGGCAACCTTGTTACAATGGAGTGGTGGACACATGTATGGCTGAATGAGGGGTTTGCGACATGGGTGAGCTATTTAGCAACTGATAACTGTTTTCCTGAGTGGAAAATATGGTCTCAATTTCTTCATGAATCTACTGAGGGTCTTAGGTTGGATGGACTTGCGGAATCCCACCCAATTGAGGTGGAAATCAATCATGCTTGTGAGATTGATGAAATATTTGATGCAATAAGTTATAAAAAAGGTGCATCCGTAATCAGGATGCTGCAAAGCTATCTTGGTGCCGAATGCTTTCAGAGATCGCTGGCTTCATATATAAAAAGACATGCTTGCTCAAATGCTAAGACTGAGGATCTATGGGCTGCACTTGAGGAAGGATCTGGTGAACATGTGAACAAGTTAATGACCTCATGGACAAAGCAGAAAGGATATCCTGTTGTATCTGTTAAAGTCAATGATCAGAAATTGGAATTTAATCAGTCACAATTCTTGTCAAGTGGTGCTCAAGGAGAAGGCCATTGGATAGTTCCAATAACATTATGCTTTGGCTCTTATGATGTCTGCAAGAGTTTCCTCTTGCAATCAAAATCTGAAACACATGAAGTCAAAGAGTTCCTTGGTTCCACAGACAAAGGTGTAAATTGTTGGATTAAACTTAATGTGGATCAGGCTGGTTTCTACAGGGTGAAATATGATGAGCTGCTTGCTGCTAGACTTAGATATGCAGTAGAGAAACAACTCTTATCTGCATCTGACCGGTTTGGCATTTTGGATGATTCATTTGCACTCTGTATGGCTTGCCAAGAATCATTGCCCTCCTTGATTAACTTGATGGGATCTTACAGGGAGGAAGTTGATTATACCGTGCTGTCTAACCTGATAACTATAAGTCTTAAAGTTCAACGTATTGCAGCTGATGCAGTACCAGACTTACTAGAATATTTCAAGCAGTTCTTTATTAACCTTTTCCAGTACTCTGCTGAGAGGCTTGGTTGGGAGCCTAAACCAGGAGAAAGTCATGTAGATGCAATGTTGAGAGGAGAAATTTTGACAGCCCTTGCTATGTTTGGTCACAATTTGACACTGGATGAAGCAAGCAAGCGTTTTCTGGCATTCTTAGAAAACAGAAATACACCACTTCTTCCACCCGATATAAGAAAGGCGGCATATGTAGCTGTAATGCAACGGGCAAGCAAATCTAACAGATCGGATTATGAATCACTTTTGAAAGTATATCGGGAAACTGACCTAAGCCAGGAGAAAACACGTATTCTGGGCTCTCTGGCATCTTCACGTGATCCAGATCTAATTCTTGAAGCTCTTAACTTCATGTTGTCATCTGAGGTTCGTAGTCAGGATGCTGTTTTTGGACTTGCTGTTACTCAGGAAGGACGAAATGTAGCTTGGGCATGGCTTAAGGAAAATTGGGAACACCTCATAAAAACATATGGTTCAGGATTTTTGATAACTCGGTTTGTCAGTGCAGTTGTCTCACCGTTTGCTTCCTTTGAGAAGGCCAAGGAGGTAGAGGAATTCTTTGCTAGCCACGCTATGCCATTCATTGCTAGAACGTTAAGGCAGAGCCTTGAGCGGGTCAATATCAATGCAAACTGGGTTCAGAATGTTCAGAACGAAAATAGGCTTGGTGATGCTGTGAAGGAATTGGCATACAGAAAATACTAG
>Glyma.06g053800.1.p sequence-type=predicted peptide transcript=Glyma.06g053800.1 locus=Glyma.06g053800 ID=Glyma.06g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDQFKGKPRLPKFAVPKRYDLRLKPDLVAHRFAGSVAVHLDIVPATSFIVLNAAELSVSNDAVSFTNQDSSKVIKPSRVELFENDEILVLEFPEELPIGFGVLSIRFEGILNDRMKGFYRSTYEHNGEKKTMAVTQFAPADARRCFPCWDEPSCKASFKITLDVPSELVALSNMPIVEEITDGNLKTVSYQESPIMSTYLVAVVVGLFDYVEDHTSDGVKVRVYCQVGKANQGKFALDVAVKSLELYKGYFATPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHVWLNEGFATWVSYLATDNCFPEWKIWSQFLHESTEGLRLDGLAESHPIEVEINHACEIDEIFDAISYKKGASVIRMLQSYLGAECFQRSLASYIKRHACSNAKTEDLWAALEEGSGEHVNKLMTSWTKQKGYPVVSVKVNDQKLEFNQSQFLSSGAQGEGHWIVPITLCFGSYDVCKSFLLQSKSETHEVKEFLGSTDKGVNCWIKLNVDQAGFYRVKYDELLAARLRYAVEKQLLSASDRFGILDDSFALCMACQESLPSLINLMGSYREEVDYTVLSNLITISLKVQRIAADAVPDLLEYFKQFFINLFQYSAERLGWEPKPGESHVDAMLRGEILTALAMFGHNLTLDEASKRFLAFLENRNTPLLPPDIRKAAYVAVMQRASKSNRSDYESLLKVYRETDLSQEKTRILGSLASSRDPDLILEALNFMLSSEVRSQDAVFGLAVTQEGRNVAWAWLKENWEHLIKTYGSGFLITRFVSAVVSPFASFEKAKEVEEFFASHAMPFIARTLRQSLERVNINANWVQNVQNENRLGDAVKELAYRKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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