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Report for Sequence Feature Glyma.06g053600

Feature Type:gene_model
Chromosome:Gm06
Start:4067295
stop:4070969
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g053600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33100.1AT JGI N/AIEA
GO:0000506GO-cc glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex EnsemblGenomesN/AIEA
GO:0017176GO-mf phosphatidylinositol N-acetylglucosaminyltransferase activity EnsemblGenomesN/AIEA
KOG3481 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR21329Panther PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED JGI N/AIEA
PTHR21329:SF9Panther JGI N/AIEA
PF02297PFAM Cytochrome oxidase c subunit VIb JGI N/AIEA
PF05254PFAM Uncharacterised protein family (UPF0203) JGI N/AIEA

Expression Patterns of Glyma.06g053600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g053600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05640 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g053600
>Glyma.06g053600.2 sequence-type=transcript locus=Glyma.06g053600 ID=Glyma.06g053600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAAATTTCTAAAATCTAAAATAAACATAATGATGTAGTCCTACTACAGTTTCCATGGATCAACTACACTTGGTTGACACTTGGCAGGTTTAATTTGAAAGCTCCGTTGCTAGACGATCACGGTTGACGCCAATTGCTCCCTCCCTCCATGAGATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTgaacatttggaagataagcatctgattcgtttcttacaagctgacggcgttgttcaagacagtggtgttgcttctcagtaacttgtagggagtaaggtgattcacccatcaattGTAACTAACTACGAAGCTTATTCATGTGACGACCACTGTTGATGTGGTATTTGAAGTTACGCTGCCTGTACGTTGTATCTTTGTTTGAACAGTGCAAGCTTTGTATTTCCGTCAGAAATCTTGGTGGTTTTAAATCATGGTCTATTGCAATGGGTTGAAATGAACATTTGGTGAGGGTGAATTATGGTAACTTGGCAAGTGACAATTTTTTAATGCCATCTTTCAAGAAATTCTAAAGGAGAGGGGAATGTTTAACTAATCCGCCAGTGAAGAGATTTCCAGGACGAAGGTGAAGTTTAAACGTCCTCTCTAAAAAACAAAGGTTTAATTAGTCTGGGGTCTCTAAACTCTTACAAATTTACAAATAAGTCCCTGATTTTTTTTCGAAGTGGGTCCTGAACTTTTTTTTAATACAGTTTTGAAATCAAATTTATATGCCTAGTCGTTGAATGTCGCACGCGATCACTGTAAATCTAGGGGTATTTGTGTAATTTCACAAAATTTTAGGGGGTGATTAGTGTTTTTTTACCCTTTTTCTTTACCACCGCATCTATTTGTAAAAACATTGTGCTAGTAAAATTTACAAAAGGAGTCAATTAACGGT

>Glyma.06g053600.3 sequence-type=transcript locus=Glyma.06g053600 ID=Glyma.06g053600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAAATTTCTAAAATCTAAAATAAACATAATGATGTAGTCCTACTACAGTTTCCATGGATCAACTACACTTGGTTGACACTTGGCAGGTTTAATTTGAAAGCTCCGTTGCTAGACGATCACGGTTGACGCCAATTGCTCCCTCCCTCCATGAGATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTgaacatttggaagataagcatctgattcgtttcttacaagctgacggcgttgttcaagacagtggtgttgcttctcagtaacttgtagggagtaagGTAGACTCTGGAGTTTGACAACATAGTCCTAGAAGATATTAGGCAGTCTTTCAACTGCATTCTGGATCTCTGAATTAACACTGTTGTTTTGGGCCGGGGAGGATATTAAGCTGTCTTGCACAGTTCAGTTATTCATAAACTTACTATTTTGAACATTTCATCTGTGTCCTAGCATGAACAAACCCATAACAACTATATCTCTGGCTCCTAGTTTGAATGAATCCATATCCCATTACAGTTTTCTGCTACGAACCCAGTGATCTAGCCATTTCATTTCATCGGGAATGAACCCATCATATTCATAGCTCAGTGTCCCAGGGTGAATCATCAATCAAACATCAATGAGGTAACTAACTACGAAGCTTATTCATGTGACGACCACTGTTGATGTGGTATTTGAAGTTACGCTGCCTGTACGTTGTATCTTTGTTTGAACAGTGCAAGCTTTGTATTTCCGTCAGAAATCTTGGTGGTTTTAAATCATGGTCTATTGCAATGGGTTGAAATGAACATTTGGTGAGGGTGAATTATGGTAACTTGGCAAGTGACAATTTTTTAATGCCATCTTTCAAGAAATTCTAAAGGAGAGGGGAATGTTTAACTAATCCGCCAGTGAAGAGATTTCCAGGACGAAGGTGAAGTTTAAACGTCCTCTCTAAAAAACAAAGGTTTAATTAGTCTGGGGTCTCTAAACTCTTACAAATTTACAAATAAGTCCCTGATTTTTTTTCGAAGTGGGTCCTGAACTTTTTTTTAATACAGTTTTGAAATCAAATTTATATGCCTAGTCGTTGAATGTCGCACGCGATCACTGTAAATCTAGGGGTATTTGTGTAATTTCACAAAATTTTAGGGGGTGATTAGTGTTTTTTTACCCTTTTTCTTTACCACCGCATCTATTTGTAAAAACATTGTGCTAGTAAAATTTACAAAAGGAGTCAATTAACGGT

>Glyma.06g053600.4 sequence-type=transcript locus=Glyma.06g053600 ID=Glyma.06g053600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAAATTTCTAAAATCTAAAATAAACATAATGATGTAGTCCTACTACAGTTTCCATGGATCAACTACACTTGGTTGACACTTGGCAGGTTTAATTTGAAAGCTCCGTTGCTAGACGATCACGGTTGACGCCAATTGCTCCCTCCCTCCATGAGATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTgaacatttggaagataagcatctgattcgtttcttacaagctgacggcgttgttcaagacagtggtgttgcttctcagtaacttgtagggagtaagCTGTGTCCTAGCATGAACAAACCCATAACAACTATATCTCTGGCTCCTAGTTTGAATGAATCCATATCCCATTACAGTTTTCTGCTACGAACCCAGTGATCTAGCCATTTCATTTCATCGGGAATGAACCCATCATATTCATAGCTCAGTGTCCCAGGGTGAATCATCAATCAAACATCAATGAGGTAACTAACTACGAAGCTTATTCATGTGACGACCACTGTTGATGTGGTATTTGAAGTTACGCTGCCTGTACGTTGTATCTTTGTTTGAACAGTGCAAGCTTTGTATTTCCGTCAGAAATCTTGGTGGTTTTAAATCATGGTCTATTGCAATGGGTTGAAATGAACATTTGGTGAGGGTGAATTATGGTAACTTGGCAAGTGACAATTTTTTAATGCCATCTTTCAAGAAATTCTAAAGGAGAGGGGAATGTTTAACTAATCCGCCAGTGAAGAGATTTCCAGGACGAAGGTGAAGTTTAAACGTCCTCTCTAAAAAACAAAGGTTTAATTAGTCTGGGGTCTCTAAACTCTTACAAATTTACAAATAAGTCCCTGATTTTTTTTCGAAGTGGGTCCTGAACTTTTTTTTAATACAGTTTTGAAATCAAATTTATATGCCTAGTCGTTGAATGTCGCACGCGATCACTGTAAATCTAGGGGTATTTGTGTAATTTCACAAAATTTTAGGGGGTGATTAGTGTTTTTTTACCCTTTTTCTTTACCACCGCATCTATTTGTAAAAACATTGTGCTAGTAAAATTTACAAAAGGAGTCAATTAACGGT
Coding sequences of Glyma.06g053600
>Glyma.06g053600.1 sequence-type=CDS polypeptide=Glyma.06g053600.1.p locus=Glyma.06g053600 ID=Glyma.06g053600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA

>Glyma.06g053600.2 sequence-type=CDS polypeptide=Glyma.06g053600.2.p locus=Glyma.06g053600 ID=Glyma.06g053600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA

>Glyma.06g053600.3 sequence-type=CDS polypeptide=Glyma.06g053600.3.p locus=Glyma.06g053600 ID=Glyma.06g053600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA

>Glyma.06g053600.4 sequence-type=CDS polypeptide=Glyma.06g053600.4.p locus=Glyma.06g053600 ID=Glyma.06g053600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA
Predicted protein sequences of Glyma.06g053600
>Glyma.06g053600.1.p sequence-type=predicted peptide transcript=Glyma.06g053600.1 locus=Glyma.06g053600 ID=Glyma.06g053600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*

>Glyma.06g053600.2.p sequence-type=predicted peptide transcript=Glyma.06g053600.2 locus=Glyma.06g053600 ID=Glyma.06g053600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*

>Glyma.06g053600.3.p sequence-type=predicted peptide transcript=Glyma.06g053600.3 locus=Glyma.06g053600 ID=Glyma.06g053600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*

>Glyma.06g053600.4.p sequence-type=predicted peptide transcript=Glyma.06g053600.4 locus=Glyma.06g053600 ID=Glyma.06g053600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*






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