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Report for Sequence Feature Glyma.06g052300

Feature Type:gene_model
Chromosome:Gm06
Start:3935229
stop:3939297
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g052300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11870.2AT Alkaline phytoceramidase (aPHC) JGI N/AIEA
GO:0006672GO-bp ceramide metabolic process EnsemblGenomesN/AIEA
GO:0006672GO-bp ceramide metabolic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0016811GO-mf hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides EnsemblGenomesN/AIEA
GO:0016811GO-mf hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides JGI N/AIEA
PF05875PFAM Ceramidase JGI N/AIEA

Expression Patterns of Glyma.06g052300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g052300
ParalogEvidenceComments
Glyma.04g051500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g052300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05480 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g052300
>Glyma.06g052300.2 sequence-type=transcript locus=Glyma.06g052300 ID=Glyma.06g052300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAACTAGCaagtcaaatcaaaatcacaaccgaactcaaacccaaaacccaaacAAACGACAAATTTCCTTTTCGCAGAGGGACACTGTTCTGTTCGGTGTCCAGACAGAAAGAGGCACCTTTTCCAAACCTCCAAAAAACCAACCAAGGGTTTTCAACAAAACCTTTTACAACGTTACAAAAAAATAAAAGTGAGAAAGAGGAAAAGGAAAAAAAATGATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCGACAATGCAGAAGGTGGACGACAAGTCGCATATGGGGAGCAACGTTTCTTTGTTGCATGTGCTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCACCACCAATTCGTTGACATGCGCAATCTTCTCGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGGAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCAGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTGTGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGCTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAGTTTATGAACGAATTTATAATGATATTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCAGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTATTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACCGACAGGAAACTGTACCATGTAAATAACTACATTATCAGTGGACATTCTTTGGAACACTTGTGCTTAGCACTGATCCCAATTTTACTCAGCGTAATGCTCATCCACAGGGAACTTAAGTTTCAAAGATTAGTTGATCTTAAAGATCGACCATGAAGAGGTAGAGAGAATTGATGATTGTTGAATTGCTCCTGGATTGCTGAGATGTTGGTTGGAGTCATAGATGATTGAAAATGCCTTAGGATTATGTAAACCATGGTCGGCGAACTAGATCAAGTTAAACTTGTCTTCCATAACTGGCAAGTCTAACTAGTTTAGCTGTATAGTGGGGTCAAATTCCTTTATCTTTATTTACAAAGGAATCTCTGTTGACACCAATCTGATTTTGCCTGGTGGGTCGTCATGTGTATGAAAGCTTGTGCATTTCAGATTATATAGGAATATGTATGATTGAGGACCCGAGGAGACGGACAAGAGGTTTCTAACTTGAATTGGTTTTTCTTTGTCGTTCTTCATTGCCCTTGTGAAAATTGTGACAGCATTATTGATTCATTGAGAATTTTGTAACTAGTCTCTGTTGAGTTTGTTTTTTGGGGTGTGAGAATAACTAACATGCAGAAAGCAATCATAGATTCTGTTGTGAACTTGTGAGAGACTTAAGATTGCTCTCTCTGGATTTATTATGGATGAATCCAGGTGGCAATAGAGGATTTGAGATTCACATTAACAAAGGTCAAGGCACGTGTTGGCGCTTTAGATGCTCACCTGGCAAAATATATTATATATGTTCCCTTCACATGCTGTTGCTTTGTCCTTTTTAATAACTTTTAATCTTTTTATGGCTCCTTACATATTCATAATCATGTGGCTTGTACCCATATACTCATAATTATATATTTGTATTACGTTCGGTGATCTTTCGTTTTCTTTTGGCCCCCTCTTCCTACTCCATTATGGTAAGGGAAGATCAAATTCGTTTGTTTGAACTTTTTATGTTTAATTTC

>Glyma.06g052300.3 sequence-type=transcript locus=Glyma.06g052300 ID=Glyma.06g052300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
tcaaatcaaaatcacaaccgaactcaaacccaaaacccaaacAAACGACAAATTTCCTTTTCGCAGAGGGACACTGTTCTGTTCGGTGTCCAGACAGAAAGAGGCACCTTTTCCAAACCTCCAAAAAACCAACCAAGGGTTTTCAACAAAACCTTTTACAACGTTACAAAAAAATAAAAGTGAGAAAGAGGAAAAGGAAAAAAAATGATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCGACAATGCAGAAGGTGGACGACAAGTCGCATATGGGGAGCAACGTTTCTTTGTTGCATGTGCTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCACCACCAATTCGTTGACATGCGCAATCTTCTCGATTCTCCAGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGGAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCAGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTGTGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGCTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAGTTTATGAACGAATTTATAATGATATTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCAGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTATTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACCGACAGGAAACTGTACCATGTAAATAACTACATTATCAGTGGACATTCTTTGGAACACTTGTGCTTAGCACTGATCCCAATTTTACTCAGCGTAATGCTCATCCACAGGGAACTTAAGTTTCAAAGGTAATGATCAAAAAATATCTTGCTGCTATATTTAGAAATTAGTATGTCAAACTATCCTAGTTATTCTACTTTCGAATTAGTTATAATCTTTGTCTCGTAACTGATGTCCCTTGCTGCTATATTTAGAAATTGGTATATCAAAATATCTTTTTGTTATATGTATATGGGTTTGATGACAGATTAGTTGATCTTAAAGATCGACCATGAAGAGGTAGAGAGAATTGATGATTGTTGAATTGCTCCTGGATTGCTGAGATGTTGGTTGGAGTCATAGATGATTGAAAATGCCTTAGGATTATGTAAACCATGGTCGGCGAACTAGATCAAGTTAAACTTGTCTTCCATAACTGGCAAGTCTAACTAGTTTAGCTGTATAGTGGGGTCAAATTCCTTTATCTTTATTTACAAAGGAATCTCTGTTGACACCAATCTGATTTTGCCTGGTGGGTCGTCATGTGTATGAAAGCTTGTGCATTTCAGATTATATAGGAATATGTATGATTGAGGACCCGAGGAGACGGACAAGAGGTTTCTAACTTGAATTGGTTTTTCTTTGTCGTTCTTCATTGCCCTTGTGAAAATTGTGACAGCATTATTGATTCATTGAGAATTTTGTAACTAGTCTCTGTTGAGTTTGTTTTTTGGGGTGTGAGAATAACTAACATGCAGAAAGCAATCATAGATTCTGTTGTGAACTTGTGAGAGACTTAAGATTGCTCTCTCTGGATTTATTATGGATGAATCCAGGTGGCAATAGAGGATTTGAGATTCACATTAACAAAGGTCAAGGCACGTGTTGGCGCTTTAGATGCTCACCTGGCAAAATATATTATATATGTTCCCTTCACATGCTGTTGCTTTGTCCTTTTTAATAACTTTTAATCTTTTTATGGCTCCTTACATATTCATAATCATGTGGCTTGTACCCATATACTCATAATTATATATTTGTATTACGTTC
Coding sequences of Glyma.06g052300
>Glyma.06g052300.1 sequence-type=CDS polypeptide=Glyma.06g052300.1.p locus=Glyma.06g052300 ID=Glyma.06g052300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCGACAATGCAGAAGGTGGACGACAAGTCGCATATGGGGAGCAACGTTTCTTTGTTGCATGTGCTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCACCACCAATTCGTTGACATGCGCAATCTTCTCGATTCTCCAGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGGAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCAGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTGTGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGCTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAGTTTATGAACGAATTTATAATGATATTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCAGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTATTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACCGACAGGAAACTGTACCATGTAAATAACTACATTATCAGTGGACATTCTTTGGAACACTTGTGCTTAGCACTGATCCCAATTTTACTCAGCGTAATGCTCATCCACAGGGAACTTAAGTTTCAAAGATTAGTTGATCTTAAAGATCGACCATGA

>Glyma.06g052300.2 sequence-type=CDS polypeptide=Glyma.06g052300.2.p locus=Glyma.06g052300 ID=Glyma.06g052300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCGACAATGCAGAAGGTGGACGACAAGTCGCATATGGGGAGCAACGTTTCTTTGTTGCATGTGCTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCACCACCAATTCGTTGACATGCGCAATCTTCTCGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGGAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCAGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTGTGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGCTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAGTTTATGAACGAATTTATAATGATATTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCAGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTATTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACCGACAGGAAACTGTACCATGTAAATAACTACATTATCAGTGGACATTCTTTGGAACACTTGTGCTTAGCACTGATCCCAATTTTACTCAGCGTAATGCTCATCCACAGGGAACTTAAGTTTCAAAGATTAGTTGATCTTAAAGATCGACCATGA

>Glyma.06g052300.3 sequence-type=CDS polypeptide=Glyma.06g052300.3.p locus=Glyma.06g052300 ID=Glyma.06g052300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGTTTAGGTTGGGTGGCGAAGCCGAATAATCGACAATGCAGAAGGTGGACGACAAGTCGCATATGGGGAGCAACGTTTCTTTGTTGCATGTGCTTAATCTTCTTCACTCCCAGAATCCCTCGCTCTCCCAAGCACCACCAATTCGTTGACATGCGCAATCTTCTCGATTCTCCAGGAGTACCCAACACGTTGAATGTGATGACAAATTTCCCGTTTTTAGTTGTGGGTGTTCTGGGCCTTGTGCTTGCCCTGGAAGGAGGTGTCTTCAACATAAGTTCCCAAGGAGAGGTTTGGACATGGGCACTGTTCTATGCTGGAATAGCAGGTGTGGCTTTTGGCTCTGCTTATTACCATTTGAAGCCCGATGACCATCGTGTGTTGTGGGACACTTTACCGATGATGGTGGCCTTCTCCTCACTTTTGTCTAGCTTGGTTGTTGAGAGATTGGGCCAGAGGATTGGACTGTGTTGTATGTTTGCACTCAATCTTGCTGCCTTTCTATGTGTAGTTTATGAACGAATTTATAATGATATTCGGTTCTGCATGATGTTCCAGTTGACTCTGCCTCTAGCTATTCCAGTAATAGCAGTCTTGTACCGCTCCAAATATACTCACTCAAGATATTGGTTTATTTCTACAGGGATTTATCTGCTAGCAAAATTTGAAGGTGCTACCGACAGGAAACTGTACCATGTAAATAACTACATTATCAGTGGACATTCTTTGGAACACTTGTGCTTAGCACTGATCCCAATTTTACTCAGCGTAATGCTCATCCACAGGGAACTTAAGTTTCAAAGGTAA
Predicted protein sequences of Glyma.06g052300
>Glyma.06g052300.1.p sequence-type=predicted peptide transcript=Glyma.06g052300.1 locus=Glyma.06g052300 ID=Glyma.06g052300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGLGWVAKPNNRQCRRWTTSRIWGATFLCCMCLIFFTPRIPRSPKHHQFVDMRNLLDSPGVPNTLNVMTNFPFLVVGVLGLVLALEGGVFNISSQGEVWTWALFYAGIAGVAFGSAYYHLKPDDHRVLWDTLPMMVAFSSLLSSLVVERLGQRIGLCCMFALNLAAFLCVVYERIYNDIRFCMMFQLTLPLAIPVIAVLYRSKYTHSRYWFISTGIYLLAKFEGATDRKLYHVNNYIISGHSLEHLCLALIPILLSVMLIHRELKFQRLVDLKDRP*

>Glyma.06g052300.2.p sequence-type=predicted peptide transcript=Glyma.06g052300.2 locus=Glyma.06g052300 ID=Glyma.06g052300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGLGWVAKPNNRQCRRWTTSRIWGATFLCCMCLIFFTPRIPRSPKHHQFVDMRNLLGVPNTLNVMTNFPFLVVGVLGLVLALEGGVFNISSQGEVWTWALFYAGIAGVAFGSAYYHLKPDDHRVLWDTLPMMVAFSSLLSSLVVERLGQRIGLCCMFALNLAAFLCVVYERIYNDIRFCMMFQLTLPLAIPVIAVLYRSKYTHSRYWFISTGIYLLAKFEGATDRKLYHVNNYIISGHSLEHLCLALIPILLSVMLIHRELKFQRLVDLKDRP*

>Glyma.06g052300.3.p sequence-type=predicted peptide transcript=Glyma.06g052300.3 locus=Glyma.06g052300 ID=Glyma.06g052300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGLGWVAKPNNRQCRRWTTSRIWGATFLCCMCLIFFTPRIPRSPKHHQFVDMRNLLDSPGVPNTLNVMTNFPFLVVGVLGLVLALEGGVFNISSQGEVWTWALFYAGIAGVAFGSAYYHLKPDDHRVLWDTLPMMVAFSSLLSSLVVERLGQRIGLCCMFALNLAAFLCVVYERIYNDIRFCMMFQLTLPLAIPVIAVLYRSKYTHSRYWFISTGIYLLAKFEGATDRKLYHVNNYIISGHSLEHLCLALIPILLSVMLIHRELKFQR*






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