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Report for Sequence Feature Glyma.06g051100

Feature Type:gene_model
Chromosome:Gm06
Start:3873914
stop:3878365
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g051100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26030.1AT ferrochelatase 1 JGI N/AIEA
GO:0006779GO-bp porphyrin-containing compound biosynthetic process EnsemblGenomesN/AIEA
GO:0006783GO-bp heme biosynthetic process EnsemblGenomesN/AIEA
GO:0006783GO-bp heme biosynthetic process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004325GO-mf ferrochelatase activity EnsemblGenomesN/AIEA
GO:0004325GO-mf ferrochelatase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
KOG1321 KOG Protoheme ferro-lyase (ferrochelatase) JGI N/AIEA
PTHR11108Panther FERROCHELATASE JGI N/AIEA
PF00762PFAM Ferrochelatase JGI N/AIEA
HEME-BIOSYNTHESIS-IISoyCyc9 heme b biosynthesis I (aerobic) Plant Metabolic Network ISS
PWY-5918SoyCyc9 superpathay of heme b biosynthesis from glutamate Plant Metabolic Network ISS
GN7V-57510SoyCyc9-rxn ferrochelatase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g051100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g051100
ParalogEvidenceComments
Glyma.04g050400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g051100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g051100
>Glyma.06g051100.1 sequence-type=CDS polypeptide=Glyma.06g051100.1.p locus=Glyma.06g051100 ID=Glyma.06g051100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACGCAACCTTATACTCTGCTGCTTTTCCTACCACGTTTCGCAGTCTCGATCATCGCAATTTCTCAGCGTTATGTTCGGATATCCAAAATCCTGGCTATGTTGATTACCATTCAAATTCTAATAAGTCTACATCTCAAGCGTCTTTGTTTTTGCGTTCTGATTCCACCAATAGAAGCAATGTCGTGCTTGGTGGAGCACTTTGTGTGAACCCCTCTGGCAGGAGAAACCTAGTTGGTCCGGCTTCTTATTCTGTAGAGACGAGTGCTTATGATGTGGCTTCTTTAGAATCTCCTTCCCATGTCGCTGAAGAAAAAGTTGGTGTGCTGCTTCTCAATCTAGGAGGACCAGAGACATTGAATGACGTTCAACCTTTTCTGTTTAATCTTTTTGCAGATCCTGATATCATTCGTCTTCCAAGGTTGTTTCGGTTTCTCCAGCGACCATTGGCAAAATTGATTTCTGTACTTCGGTCTCCTAAATCCAAGGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTACGCAAAATTACAGATGACCAGGCACTCGCAATTAAAATGGCTTTGGAAGCAAAGGGCATCTCTTCAAATGTCTATGTTGGGATGCGGTACTGGTACCCATTTACTGAAGAAGCAATTCAACAAATTAAGAGGGACAGAATAACAAGGCTTGTGGTACTACCCCTTTATCCCCAGTTTTCTATATCCACAACTGGTTCAAGCATCCGCATTCTTGAGCATATATTCAGGGAAGATGCCTATTTGTCCAAGCTTCCTGTTTCCATTATAAACTCTTGGTATCAACGAGAAGGTTATATTAAGTCAATGGGTAACTTAATTCAGAAAGAGCTTCAGAGTTTTTCTGAACCAAAAGAGGTAATGATATTTTTCAGTGCCCACGGTGTACCTGTCAGTTACGTTGAGGATGCTGGGGATCCATACCGAGACCAAATGGAGGAGTGCATCTTCTTGATCATGCAAGAGTTGAAAGCTCGAGGAATTAGTAATGAGCACACTCTTGCTTATCAGAGTCGAGTGGGTCCTGTACAGTGGCTGAAACCATATACAGATGAAGTTCTCGTTGAGCTTGGCCAAAAAGGTGTGAAGAGTCTTTTAGCTGTTCCAGTGAGTTTTGTGAGTGAGCATATTGAAACCCTTGAAGAAATTGACATGGAGTACAAGGAATTGGCTATTGAATCTGGCATCAAGAATTGGGCACGTGTACCTGCCCTTGGTGTTACCCCTTCCTTCATTACAGATTTGGCAGATGCAGTAATAGAAGCTCTCCCGTCAGCAACAGCAATGTATGCACCAACCAGCATCTCTGAAGATGTTGATCATGACCCAGTTAGTTATTTTATCAAGATATTCTGTGGTTCAATCTTGGCATTCATCTTGTTCTTGTCACCCAAAATGATCATGGCATTCAGGAATCAAGTCATTTAG
Predicted protein sequences of Glyma.06g051100
>Glyma.06g051100.1.p sequence-type=predicted peptide transcript=Glyma.06g051100.1 locus=Glyma.06g051100 ID=Glyma.06g051100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNATLYSAAFPTTFRSLDHRNFSALCSDIQNPGYVDYHSNSNKSTSQASLFLRSDSTNRSNVVLGGALCVNPSGRRNLVGPASYSVETSAYDVASLESPSHVAEEKVGVLLLNLGGPETLNDVQPFLFNLFADPDIIRLPRLFRFLQRPLAKLISVLRSPKSKEGYAAIGGGSPLRKITDDQALAIKMALEAKGISSNVYVGMRYWYPFTEEAIQQIKRDRITRLVVLPLYPQFSISTTGSSIRILEHIFREDAYLSKLPVSIINSWYQREGYIKSMGNLIQKELQSFSEPKEVMIFFSAHGVPVSYVEDAGDPYRDQMEECIFLIMQELKARGISNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEIDMEYKELAIESGIKNWARVPALGVTPSFITDLADAVIEALPSATAMYAPTSISEDVDHDPVSYFIKIFCGSILAFILFLSPKMIMAFRNQVI*






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