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Report for Sequence Feature Glyma.06g050800

Feature Type:gene_model
Chromosome:Gm06
Start:3857380
stop:3863236
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g050800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20430.1AT JGI N/AIEA
GO:0006408GO-bp snRNA export from nucleus EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
KOG3948 KOG Mediator of U snRNA nuclear export PHAX JGI N/AIEA
PTHR13135Panther CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 JGI N/AIEA
PF10258PFAM PHAX RNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.06g050800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g050800
ParalogEvidenceComments
Glyma.04g049800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g050800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g05360 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g050800
>Glyma.06g050800.2 sequence-type=transcript locus=Glyma.06g050800 ID=Glyma.06g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTTTCTCTGTTGGATGAAAATTGGACGCGAACTTTCGTCTTTTATTTTCTCTCCAATTCTTAAGAGCTAGCTGTTTGTTATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTaacaagaagaagaataagaagaaaaggaagGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGAATCTGGAAGTGAGTGGTCTTATAACTTGGCAAGATTTTCTTTCCTCTTAGAGGGAGATCTACCGATACATCTCTCTCATTCACCTTTGGGACTGGGGCTATACTACTTTCTCCTTTCTTCTGTTCCATTTTTCTCTCCGTCCTTCTCGTTTTCCTTTTTTCGCTTTTGAGAAACGAGTTCGCGGATGGAGCAGTATTTTCCGTTTTGATTTTTTTATTCCCGAAGGAAATTTGACATTTATGCTAGAGAGGTATTTATTTACTTTGCCTTCTAATATACTGGTAGTTACGAGGGGAAATTAGTATGAACCAAAAAATAGAAAGAAAGGAAAAGGATATTTACTGCGGGATGTGTTGTGATTCCTATTGGTCAACGATGTCACAAGTAGCTTTGGTTAGTGCGT

>Glyma.06g050800.3 sequence-type=transcript locus=Glyma.06g050800 ID=Glyma.06g050800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGTTTAATATACAAAAATTGTCTATAGAATTATGTGAAGATGTTGTTTGATGTTAATCTGAATTTCAAGAGTAGGGCAAGACTTGCTGCAGTTGCCTACTACTCCGCTTCCTCACATTGGAGCAGTCTCCATCATTCTTTCGGGTTTGATTTTTCACTCAACCCCTGCACTGCAGTTCCAAGGCTAGCTGTTTGTTATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTaacaagaagaagaataagaagaaaaggaagGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGTTTGATGGGATTACTCCAAGGTAGCTGCACAGTTGTGATGATTTCTACAACCTCAGCTCTAATCTGACAAATGTTTTGGGGTTTACATGGTCCTATGGCTACTTTCTGAATACTCCAGATCTTGGCTTAAGTCACTGGCATAATGGCCTTCTCTGTTGATTTCCCATTGGAACGTGCTTTGTGTTTCTCGGATATAAATTTTTATTTTTGCGAATTATTTTCATTTCTTCAATGGGCATGTGGTTATGGTTGGGAGGATACATAATTGGTTACCTGTTGTAGGGTTAAGGTTCTACAAGATTTGGATTTTTCTTCCAGATGCTAGTTTGCTCCTTCCAAACCCCTGCTTGAGCTTTGAT
Coding sequences of Glyma.06g050800
>Glyma.06g050800.1 sequence-type=CDS polypeptide=Glyma.06g050800.1.p locus=Glyma.06g050800 ID=Glyma.06g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGA

>Glyma.06g050800.2 sequence-type=CDS polypeptide=Glyma.06g050800.2.p locus=Glyma.06g050800 ID=Glyma.06g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGA

>Glyma.06g050800.3 sequence-type=CDS polypeptide=Glyma.06g050800.3.p locus=Glyma.06g050800 ID=Glyma.06g050800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGTTTGATGGGATTACTCCAAGGTAG
Predicted protein sequences of Glyma.06g050800
>Glyma.06g050800.1.p sequence-type=predicted peptide transcript=Glyma.06g050800.1 locus=Glyma.06g050800 ID=Glyma.06g050800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGDNILDAIYEEDTLDDDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQRPVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSYDDDLLGENPINDAT*

>Glyma.06g050800.2.p sequence-type=predicted peptide transcript=Glyma.06g050800.2 locus=Glyma.06g050800 ID=Glyma.06g050800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGDNILDAIYEEDTLDDDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQRPVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSYDDDLLGENPINDAT*

>Glyma.06g050800.3.p sequence-type=predicted peptide transcript=Glyma.06g050800.3 locus=Glyma.06g050800 ID=Glyma.06g050800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGDNILDAIYEEDTLDDDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEFDGITPR*






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