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Report for Sequence Feature Glyma.06g040100

Feature Type:gene_model
Chromosome:Gm06
Start:3015227
stop:3020272
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g040100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17650.1AT Polyketide cyclase / dehydrase and lipid transport protein JGI N/AIEA
GO:0006744GO-bp ubiquinone biosynthetic process EnsemblGenomesN/AIEA
GO:0045333GO-bp cellular respiration EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0048039GO-mf ubiquinone binding EnsemblGenomesN/AIEA
KOG3177 KOG Oligoketide cyclase/lipid transport protein JGI N/AIEA
PTHR12901Panther SPERM PROTEIN HOMOLOG JGI N/AIEA
PF03364PFAM Polyketide cyclase / dehydrase and lipid transport JGI N/AIEA

Expression Patterns of Glyma.06g040100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g040100
ParalogEvidenceComments
Glyma.04g039100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g040100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g04320 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g040100
>Glyma.06g040100.1 sequence-type=CDS polypeptide=Glyma.06g040100.1.p locus=Glyma.06g040100 ID=Glyma.06g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGCCATTTTTGTCGACCTCGAAGGCCCTTTGCTCCTTAGCATCGCGCAAAAGCGGTGGTAGTCAATTGATTAGGTCTAGCAAGAGCAGTGGGAAGCACGATGGATGCAGATGCATCACTACAGCCATTACCGGCGGCCATCACAATCATCCTTCCGTCTCTCGCATCGGCTTTTCCTCTCTCATCGGAGGATCGTGCAATAGCAATAATCATTATTATAATTATAATGTTGTTCAATCAAGACGGTTTCTTGGATGTGGAGATGGTGAAGAAGGTATTCTATCCAGAACTTACGAGGAGAGGCGCGTTTTGGGGTACTCTACAGAGCAATTATTTGAAGTTGTTTCTGCTGTTGACTTCTATCATGGTTTTGTCCCATGGTGTCAAAGGTCGGACATACTTAGACACTATCCAGACGGATCATTTGATGCTGAGTTGGAGATTGGATTTAAATTCCTCGTTGAAAGTTATGTTTCTCATGTTGAATTGGACAAACCAAAGCGTATAAAGACAACTGTGTCGCAGAGTACCCTGTTTGAGCATTTGATAAACATATGGGAGTTTAACCCTGGCCCTGTTCCAGGAAGTTGCGATCTTTATTTCTTGGTGGATTTTAAGTTTCAGTCTCCACTTTACAGACAGATTGCATCGGTGTTCTTTAAGGAGGTAGCCTCTAGGATGGTTGGTTCATTTACTGAGCGTTGCCGTTTGATATATGGACCGGAAGTGCGGGTCCTTGAAAACTCGTATGGAAAAAGGGCATAA
Predicted protein sequences of Glyma.06g040100
>Glyma.06g040100.1.p sequence-type=predicted peptide transcript=Glyma.06g040100.1 locus=Glyma.06g040100 ID=Glyma.06g040100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPFLSTSKALCSLASRKSGGSQLIRSSKSSGKHDGCRCITTAITGGHHNHPSVSRIGFSSLIGGSCNSNNHYYNYNVVQSRRFLGCGDGEEGILSRTYEERRVLGYSTEQLFEVVSAVDFYHGFVPWCQRSDILRHYPDGSFDAELEIGFKFLVESYVSHVELDKPKRIKTTVSQSTLFEHLINIWEFNPGPVPGSCDLYFLVDFKFQSPLYRQIASVFFKEVASRMVGSFTERCRLIYGPEVRVLENSYGKRA*






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