Report for Sequence Feature Glyma.06g031700
Feature Type: gene_model
Chromosome: Gm06
Start: 2450722
stop: 2455299
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.06g031700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75230.1 AT
DNA glycosylase superfamily protein
JGI N/A IEA
GO:0006281 GO-bp
DNA repair
EnsemblGenomes N/A IEA
GO:0006284 GO-bp
base-excision repair
EnsemblGenomes N/A IEA
GO:0006284 GO-bp
base-excision repair
JGI N/A IEA
GO:0006285 GO-bp
base-excision repair, AP site formation
EnsemblGenomes N/A IEA
GO:0006307 GO-bp
DNA dealkylation involved in DNA repair
EnsemblGenomes N/A IEA
GO:0005737 GO-cc
cytoplasm
EnsemblGenomes N/A IEA
GO:0032993 GO-cc
protein-DNA complex
EnsemblGenomes N/A IEA
GO:0003824 GO-mf
catalytic activity
EnsemblGenomes N/A IEA
GO:0008725 GO-mf
DNA-3-methyladenine glycosylase activity
EnsemblGenomes N/A IEA
GO:0032131 GO-mf
alkylated DNA binding
EnsemblGenomes N/A IEA
GO:0043916 GO-mf
DNA-7-methylguanine glycosylase activity
EnsemblGenomes N/A IEA
KOG1918
KOG
3-methyladenine DNA glycosidase
JGI N/A IEA
PF00730 PFAM
HhH-GPD superfamily base excision DNA repair protein
JGI N/A IEA
Expression Patterns of Glyma.06g031700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.06g031700
Paralog Evidence Comments
Glyma.04g031600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.06g031700 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma06g03470 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.06g031700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.06g031700.1 sequence-type=CDS polypeptide=Glyma.06g031700.1.p locus=Glyma.06g031700 ID=Glyma.06g031700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCGAACAGACGCTAGGTCAAGCACAACCCCTCCCCGCCCCCGATGCTGCCACGGCCCACTCCGAACTAAACAATGTCCCTCAGCCGACAACCTCCCCAGCTACGAAAATCCCCCTCCGTCCCCGCAAGATCCGGAAGGTCTCTCCGGACCCCTCCACCTCCGAAGCCCCCATCAAACCCGCCAAACCTGTTGGCCGCAACACCACCTCCAAGGCTGCTCCGCCTCGAGCCCTGACTGTGGTCCCTCGCATAGTGGCTCGCTCACTCTCCTGCGACGGCGAGGTCGAGATCTCGCTCCGCTACCTCCGCAACGCGGACCCCCTCCTCTCCCCTCTGATCGACATTCACCAACCCCCAACCTTCGACAATTTCCACACTCCCTTCCTCGCCCTAACCCGCAGCATCTTGTACCAGCAACTCGCGTTCAAAGCCGGCACCTCCATCTACACGCGCTTCATCGGCCTCTGCGGCGGCGAAAACGGCGTCGTTCCCGAAACAGTTCTCGCCCTTACTCCCCAACAGCTTCGGCAGATTGGGGTTTCGGGGCGGAAGGCCAGTTACCTTCACGATTTGGCCAGGAAGTACCAGAACGGGATACTCTCCGATTCCGCCATTGTGAACATGGATGACAAGTCGCTCTTCACCATGCTTACCATGGTCAATGGCATTGGCTCTTGGTCTGTTCACATGTTCATGATTTTCTCACTCCACAGACCCGATGTTCTCCCCATCAATGACCTTGGTGTCAGGAAAGGGGTTCAGCTTCTCTACAACCTCGAGGACTTGCCGCGGCCCTCGCAGATGGACCAGTTGTGTGACAAGTGGAGGCCTTATCGGTCTGTTGCTTCGTGGTATATGTGGAGATTTGTTGAAGCCAAGGGAACTCCTTCGAGTGCGGTGACGGTAGCGACTGGTGCCGGCTTGCAGCAGCAGCGCCATCACCAGCATCAACAACAGGAGCAACAGCAGCAGCAACACGCTCCACAGCCACAGCTTCTGGATCCCATAAATAGCATGTTTAATCTTGGGGCTGCCTGTGCTTGGGGACAATGA
Predicted protein sequences of Glyma.06g031700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.06g031700.1.p sequence-type=predicted peptide transcript=Glyma.06g031700.1 locus=Glyma.06g031700 ID=Glyma.06g031700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGEQTLGQAQPLPAPDAATAHSELNNVPQPTTSPATKIPLRPRKIRKVSPDPSTSEAPIKPAKPVGRNTTSKAAPPRALTVVPRIVARSLSCDGEVEISLRYLRNADPLLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAFKAGTSIYTRFIGLCGGENGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDLPRPSQMDQLCDKWRPYRSVASWYMWRFVEAKGTPSSAVTVATGAGLQQQRHHQHQQQEQQQQQHAPQPQLLDPINSMFNLGAACAWGQ*