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Report for Sequence Feature Glyma.06g030600

Feature Type:gene_model
Chromosome:Gm06
Start:2406377
stop:2410890
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g030600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75330.1AT ornithine carbamoyltransferase JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0006520GO-bp cellular amino acid metabolic process JGI N/AIEA
GO:0016597GO-mf amino acid binding EnsemblGenomesN/AIEA
GO:0016597GO-mf amino acid binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016743GO-mf carboxyl- or carbamoyltransferase activity EnsemblGenomesN/AIEA
GO:0016743GO-mf carboxyl- or carbamoyltransferase activity JGI N/AIEA
KOG1504 KOG Ornithine carbamoyltransferase OTC/ARG3 JGI N/AIEA
PTHR11405Panther CARBAMOYLTRANSFERASE RELATED JGI N/AIEA
PTHR11405:SF1Panther ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL JGI N/AIEA
PF00185PFAM Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JGI N/AIEA
PF02729PFAM Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JGI N/AIEA
ARGSYN-PWYSoyCyc9 L-arginine biosynthesis I (via L-ornithine) Plant Metabolic Network ISS
ARGSYNBSUB-PWYSoyCyc9 L-arginine biosynthesis II (acetyl cycle) Plant Metabolic Network ISS
CITRULLINE-DEG-PWYSoyCyc9 L-citrulline degradation Plant Metabolic Network ISS
PWY-4984SoyCyc9 urea cycle Plant Metabolic Network ISS
PWY-7060SoyCyc9 ornithine-citrulline shuttle Plant Metabolic Network ISS
GN7V-42679SoyCyc9-rxn ornithine carbamoyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g030600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g030600 not represented in the dataset
Glyma.06g030600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g030600
ParalogEvidenceComments
Glyma.04g030500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g030600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g03361 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g030600
>Glyma.06g030600.1 sequence-type=CDS polypeptide=Glyma.06g030600.1.p locus=Glyma.06g030600 ID=Glyma.06g030600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTGATCCCGTGTCACTGTTACCGTTCCGTCGGATCCGACAAACCCTACCTCTCTGGTCAGAGTCTCCGCCGTTGCGCTCCTTCCCCCGCCGTCTCCGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCCGCTGTCGCTCAGAAAGTTGGGCTGAAAGATTTTCTTCACTTGGATGATTTTGATAAGGATACTATTTTGAAGATGTTGGACCGGGCCCTTGAGGTCAAGGCATTGCTGAAGTCAGGGGACAGGTCATTTCGGCCTTTTGAGGGGAAGACAATGGCAATGATATTTACAAAGCCGTCCATGAGAACACGTGTTTCGTTCGAGACTGGCTTTACATTGTTAGGTGGCCATGCTATATATTTAGGACCCGATGACATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGGACATACTTGATCTTGCAAAATATGCTACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATAGGTCGGTTTGAAGGTACAAAGGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCCTTTCACTTCGTCTGTGCATGTCCAAAAGGATTTGAACCCGATGCAAAAACAGTTGAGAAGGCAAGGAAAGCTGGAATCAGCAAGATTGAGATAACCAATGATCCCAAAGAAGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGGTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCACTGCTTACCCGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTATTGAAGCTCCAAATTCAATAGTCTTCCCACAAGCTGAGAACCGAATGCATGCACAGAATGCTGTAATGCTTCATGTACTTGGCAAGTAA
Predicted protein sequences of Glyma.06g030600
>Glyma.06g030600.1.p sequence-type=predicted peptide transcript=Glyma.06g030600.1 locus=Glyma.06g030600 ID=Glyma.06g030600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVIPCHCYRSVGSDKPYLSGQSLRRCAPSPAVSVSFRRRISCVASSAVAQKVGLKDFLHLDDFDKDTILKMLDRALEVKALLKSGDRSFRPFEGKTMAMIFTKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDIARVLSRYNDIIMARVFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYIGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDVWASMGQKEEAEYRRQVFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIVFPQAENRMHAQNAVMLHVLGK*






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