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Report for Sequence Feature Glyma.06g027900

Feature Type:gene_model
Chromosome:Gm06
Start:2158117
stop:2168073
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g027900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75510.1AT Transcription initiation factor IIF, beta subunit JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006367GO-bp transcription initiation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0006367GO-bp transcription initiation from RNA polymerase II promoter JGI N/AIEA
GO:0032968GO-bp positive regulation of transcription elongation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0060261GO-bp positive regulation of transcription initiation from RNA polymerase II promoter EnsemblGenomesN/AIEA
GO:0005674GO-cc transcription factor TFIIF complex EnsemblGenomesN/AIEA
GO:0005674GO-cc transcription factor TFIIF complex JGI N/AIEA
GO:0000991GO-mf transcription factor activity, core RNA polymerase II binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2905 KOG Transcription initiation factor IIF, small subunit (RAP30) JGI N/AIEA
PTHR10445Panther GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 JGI N/AIEA
PF02270PFAM Transcription initiation factor IIF, beta subunit JGI N/AIEA

Expression Patterns of Glyma.06g027900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g027900
ParalogEvidenceComments
Glyma.04g027700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g027900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g03070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g027900
>Glyma.06g027900.1 sequence-type=CDS polypeptide=Glyma.06g027900.1.p locus=Glyma.06g027900 ID=Glyma.06g027900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAGGAGAATGGTTACAGTGGGAGTATCAGCTCTAACTTGGAGACTACAAAAGCAGAGAGATCTGTGTGGCTGATGAAGTGCCCTTTGGTGGTGGCTAAGTCATGGCAGACCCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCTGTCCAGTTTACAATGGAGATGGCAGGCACAGAAGCTGTGAATATGTCCAAAACTTATTCATTGAACATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAGTATGGTAAATTGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAGGACAAGAAGAAGACACAGCCGGTCAAGCAATCTGATACAAAGAGAACGAGAAGAGATAGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTCGTTCAAGAGACAGATCAACCTGCACAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTGCCAATCAAGGAACTTACGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACGAGCGCCGAATAA
Predicted protein sequences of Glyma.06g027900
>Glyma.06g027900.1.p sequence-type=predicted peptide transcript=Glyma.06g027900.1 locus=Glyma.06g027900 ID=Glyma.06g027900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEENGYSGSISSNLETTKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMAGTEAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE*






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