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Report for Sequence Feature Glyma.06g027600

Feature Type:gene_model
Chromosome:Gm06
Start:2147625
stop:2156592
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g027600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39080.1AT vacuolar proton ATPase A3 JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0007035GO-bp vacuolar acidification EnsemblGenomesN/AIEA
GO:0015986GO-bp ATP synthesis coupled proton transport EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport JGI N/AIEA
GO:0070072GO-bp vacuolar proton-transporting V-type ATPase complex assembly EnsemblGenomesN/AIEA
GO:0000220GO-cc vacuolar proton-transporting V-type ATPase, V0 domain EnsemblGenomesN/AIEA
GO:0000325GO-cc plant-type vacuole EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016471GO-cc vacuolar proton-transporting V-type ATPase complex EnsemblGenomesN/AIEA
GO:0033179GO-cc proton-transporting V-type ATPase, V0 domain EnsemblGenomesN/AIEA
GO:0033179GO-cc proton-transporting V-type ATPase, V0 domain JGI N/AIEA
GO:0015078GO-mf proton transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015078GO-mf hydrogen ion transmembrane transporter activity JGI N/AIEA
GO:0046961GO-mf proton-transporting ATPase activity, rotational mechanism EnsemblGenomesN/AIEA
GO:0051117GO-mf ATPase binding EnsemblGenomesN/AIEA
KOG2189 KOG Vacuolar H+-ATPase V0 sector, subunit a JGI N/AIEA
PTHR11629Panther VACUOLAR PROTON ATPASES JGI N/AIEA
PTHR11629:SF11Panther JGI N/AIEA
PF01496PFAM V-type ATPase 116kDa subunit family JGI N/AIEA

Expression Patterns of Glyma.06g027600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g027600
ParalogEvidenceComments
Glyma.04g027500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g027600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g03040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g027600
>Glyma.06g027600.1 sequence-type=CDS polypeptide=Glyma.06g027600.1.p locus=Glyma.06g027600 ID=Glyma.06g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAATGAAGGTCGTTTTCTTCCCACGATGGATCTGCTACGGTCGGAGCCTATGCAACTGGTTCAATTGATCATTCCAATCGAATCGGCTCATCGATCCATCTCTTACCTTGGCGATCTCGGCCTCATTCAATTCAAAGATCTCAATGCAGATAAAAGTCCATTCCAGCGAACTTATGCTTCTCAGATTAAAAGATGTGGGGAAATGGCACGTAGGCTACGGTTGTTTAAGGAACAAATGACGAAAGCAGGTGTATCGCCCTCAACGTGGTCAACAAGAGACAATCATTTTGATCTGGAACATTTGGAGGTTAAACTTGAAGAACTTGAAGCTGAGCTCCTCGAGATTAATGCAAATAATGAAAAGTTACAACACACTTACAATGAGCTATTAGAGTATAAGCTTGTTCTGGAGAAGGTTGGAGAGTTTTTCTCTTCAGCAAAAAATAAGGCTGTAGCTCAGCAGAAAGAGCTTGAATTTCAGACAACTGTTGAAGGGTCTATTGACAGTCCATTATTATTGGAACAAGAGGAGACGACAACAAAGCAAATTAAGCTGAGGTTTATTAGTGGACTTGTTCATAGGGAAAAATCAATTCCTTTCGAAAGAATTATATTTCGTGCTACTAGGGGAAATGTGTTTCTCAAACAGGCTGTGATTCAACATCCTGTTCTTGATCCTTTGTCAGGAGAGAAGGTTCATAAAAATGTATTTGTTGTCTTTTATTCTGGAGAAAGAGTTAAAAGCAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGACTTGAGTAAACAATTTCAGACGATAAGGGAGGTTTCAGGAAGACTTTCAGAATTGAAGACTACCATTGATGCAGGGTTGATTCACCGGAGCACCCTATTGCAGACAATTGGATATCACTATGAGCAGTGGAGCCTTCAGTTGAAGAAGGAAAAATCCATTTATCACACTCTAAATATGCTTAGCATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGTTGGTGTCCTGTTTTTGCAACAAGCCAGATTCACAAAGTATTGGAGCGGGCAACTATGGACTGCAGTTCTCAAGTTGGGGCGATATTTCAAGTTTTAGAGACAAAGGAATCACCACCTACCTATTTTAGCACAAACAAATTCACTTCTTCTTTTCAAGAAATTGTAGATGCCTATGGAATCGCCAAGTACCAGGAAGCAAATCCCGGTGTATACACAATTGTCACATTTCCATTCCTTTTTGCTGTGATGTTTGGTGACTGGGGGCATGGCATATGCTTATTACTGGCGGCTTTGTATTTAATAATCAGAGAGAAAAAATTTGCAAGTCAGAAACTTGGAGACATAATGGAAATGGCATTTGGCGGACGCTATATCATTATGCTGATGGCCCTCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGGGATGCTTCTACAACAGGTTTTATAAAAGTGCGTAGCACTTATCCATTTGGTGTGGATCCTAAATGGCATGGAACTCGGAGTGAACTTCCATTTCTTAATTCTTTGAAGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAATCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCGAAAACAACATAAATATCTGGTACCAGTTCGTTCCCCAGATAATATTCTTAAACAGCTTGTTTGGCTACCTTTCACTCCTCATAATTATAAAATGGAGCACTGGGTCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAAAAGCTCCTTCAACTCGTGTTACTACTGTTGGCACTTGTTGCTGTACCATGGATGCTAGTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCAAGAAAGGCATCAAGGCCAATCTTACGATTTGCTCTACGGCACCGATGACCCTCTTGAATCAGAATCACAAAGTATTCCCCATGACGAATTTGACTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTTTCTAACACGGCTTCGTATCTACGTTTATGGGCCCTCAGCTTAGCTCATTCAGAGTTGTCGAGTGTTTTCTATGACAAAGTTCTCCTTCTGGCCTGGGGGTATAATAGCACTATTGTTCTCATTGTTGGCATTTTTGTTTTTATCTGTGCAACTGTTGGTGTGTTACTGTTAATGGAAAGTCTAAGTGCTTTCTTACATGCTTTGAGACTTCACTGGGTAGAGTACCAGAACAAATTTTATGAGGGAGATGGTTACAAGTTCTTCCCGTTTTCGTTTACATTACTCACGGATGAGGATGAACTGTAA
Predicted protein sequences of Glyma.06g027600
>Glyma.06g027600.1.p sequence-type=predicted peptide transcript=Glyma.06g027600.1 locus=Glyma.06g027600 ID=Glyma.06g027600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVNEGRFLPTMDLLRSEPMQLVQLIIPIESAHRSISYLGDLGLIQFKDLNADKSPFQRTYASQIKRCGEMARRLRLFKEQMTKAGVSPSTWSTRDNHFDLEHLEVKLEELEAELLEINANNEKLQHTYNELLEYKLVLEKVGEFFSSAKNKAVAQQKELEFQTTVEGSIDSPLLLEQEETTTKQIKLRFISGLVHREKSIPFERIIFRATRGNVFLKQAVIQHPVLDPLSGEKVHKNVFVVFYSGERVKSKILKICDAFGANRYPFSDDLSKQFQTIREVSGRLSELKTTIDAGLIHRSTLLQTIGYHYEQWSLQLKKEKSIYHTLNMLSINVTKKCLLAEGWCPVFATSQIHKVLERATMDCSSQVGAIFQVLETKESPPTYFSTNKFTSSFQEIVDAYGIAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLAALYLIIREKKFASQKLGDIMEMAFGGRYIIMLMALFSIYTGLIYNEFFSVPFELFGPSAYGCRDSSCRDASTTGFIKVRSTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIIMSYFNAKYFENNINIWYQFVPQIIFLNSLFGYLSLLIIIKWSTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKLLQLVLLLLALVAVPWMLVPKPFLLKKQHQERHQGQSYDLLYGTDDPLESESQSIPHDEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNSTIVLIVGIFVFICATVGVLLLMESLSAFLHALRLHWVEYQNKFYEGDGYKFFPFSFTLLTDEDEL*






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