Glyma.06g027200

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Report for Sequence Feature Glyma.06g027200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2104472
stop:	2108449
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g027200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54340.1	AT	K-box region and MADS-box transcription factor family protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0045944	GO-bp	positive regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0000977	GO-mf	RNA polymerase II regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	JGI	N/A	IEA
KOG0014	KOG	MADS box transcription factor	JGI	N/A	IEA
PTHR11945	Panther	MADS BOX PROTEIN	JGI	N/A	IEA
PTHR11945:SF76	Panther		JGI	N/A	IEA
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI	N/A	IEA
PF01486	PFAM	K-box region	JGI	N/A	IEA

Proteins Associated with Glyma.06g027200

Locus	Gene Symbol	Protein Name
	NMH7	MADS-box protein NMH7
	AP3b	Apetala 3 gene b

Expression Patterns of Glyma.06g027200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g027200

Paralog	Evidence	Comments
Glyma.04g027200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g027200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g02990	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.06g027200

Limit To All Plant Sequences

>Glyma.06g027200.1 sequence-type=CDS polypeptide=Glyma.06g027200.1.p locus=Glyma.06g027200 ID=Glyma.06g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAGGTCACTTATTCTAAACGACGGAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTATGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGGAAACTCCACGAGTACATCAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTACCAGATGACTCTAGGAGTCGATCTCTGGAACTCTCATTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAAGATGTGAATAGGAATCTTCGTAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGGGCATGGAAGATCTCAAGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAACGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAAAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGATAATGGAGGGGAGTACGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGCATGTTCGCATTGAGCCTACAGCCAAGCCATCCTAGTGCCCAAAGCGGAGCAGCAGGCTCTGATCTTACCACTTACCCTTTACTTTTCTAG

Predicted protein sequences of Glyma.06g027200

Limit To All Plant Sequences

>Glyma.06g027200.1.p sequence-type=predicted peptide transcript=Glyma.06g027200.1 locus=Glyma.06g027200 ID=Glyma.06g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTLGVDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGDCLNDLGMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPSHPSAQSGAAGSDLTTYPLLF*

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