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Report for Sequence Feature Glyma.06g021900

Feature Type:gene_model
Chromosome:Gm06
Start:1641909
stop:1645197
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g021900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75980.1AT Single hybrid motif superfamily protein JGI N/AIEA
GO:0006546GO-bp glycine catabolic process JGI N/AIEA
GO:0005960GO-cc glycine cleavage complex JGI N/AIEA
KOG3266 KOG Predicted glycine cleavage system H protein JGI N/AIEA
PTHR13651Panther UNCHARACTERIZED JGI N/AIEA
PF01597PFAM Glycine cleavage H-protein JGI N/AIEA

Expression Patterns of Glyma.06g021900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g021900
ParalogEvidenceComments
Glyma.04g021700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g021900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g02440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g021900
>Glyma.06g021900.2 sequence-type=transcript locus=Glyma.06g021900 ID=Glyma.06g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCCTAAGTTGTTGTCACCTCACTTGTAACTTGTAAGTACCAACGAACCCAGTGGTTCTGTAACCTTTGATACCTGTTACCACATACTAGTTACGAGTGTTACCCTATTTGTCGAAGGCTGCTTGTTGCAGTTTTTTTTTTTTCTCTCTCTCTCTCTCATTTAAAATTGAATAAATAAAAAAATGTCAACCATAAACAAGGACCATATCGTCGATGAATCGAACCGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACGTGCAGAATCTTCCTCTGATCCCTCCTTCCGCCGTTGAAACCAACTTTGCCACTTACTTCGCCCTAGATTTTATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGCGTGATTGGGTTGGCTCCTTCCCACGTTGCTTTCAAGGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATGAAAGTCACTGGAAAGCGGAAGAAGAATGCACAACACTTTGAGTCCAATACGGCTTTGTGTAAAATTTCTACCAAAAATGATTCTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTGGAAGTCAATCAACAATTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGCTTACAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTAGTTAGCCTTCAGGAGTACAAGAAATTGAGGGAAGTCAATTGAATCTGGAACAAGAATGGTGCCATAATCGAAGTGCTTACCCCACATGATGCTTCATTTAGTGGGGCCCCAAATGCTACAAACCGGATCAAATTGATAAATTTTTAGGTGCAGCATATGGCGAAAAACCTTACACCGTGGCCAGATGATTAGTTAAATGAAATCTCTTAACTCCACGGCCAACCAAGAATCTCATGTTATTGGATCTACTCCATTCTTTAGGTTTTTCTCTTTTATTTTTTGCTTTGTTATTTTATTTCTTCTTTTGAACTATTTAAATTAATAACAAATAATAATGATGATGACATGACTTTTGGCCAC

>Glyma.06g021900.3 sequence-type=transcript locus=Glyma.06g021900 ID=Glyma.06g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCCTAAGTTGTTGTCACCTCACTTGTAACTTGTAAGTACCAACGAACCCAGTGGTTCTGTAACCTTTGATACCTGTTACCACATACTAGTTACGAGTGTTACCCTATTTGTCGAAGGCTGCTTGTTGCAGTTTTTTTTTTTTCTCTCTCTCTCTCTCATTTAAAATTGAATAAATAAAAAAATGTCAACCATAAACAAGGACCATATCGTCGATGAATCGAACCGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACGTGCAGAATCTTCCTCTGATCCCTCCTTCCGCCGTTGAAACCAACTTTGCCACTTACTTCGCCCTAGATTTTATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGCGTGATTGGGTTGGCTCCTTCCCACGTTGCTTTCAAGGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATGAAAGTCACTGGAAAGCGGAAGAAGAATGCACAACACTTTGAGTCCAATACGGCTTTGTGTAAAATTTCTACCAAAAATGATTCTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTGGAAGTCAATCAACAATTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGTGCTGTAGTCTAATGCTAGTACAATCAAGAATGCAAATACAGTTCACAAAGGAAGAGAAAGAGATGTTGAGAACTGTTGGTTGTGGTAGTAACTAGTATGGTTAAAAAAATTGTGTTTATGGTTCATAGGATAGTGGGAAAATGTATGTAAGGCACTAGAAATATTCTTTGGTAGATATGCACCTCATGTATGCGCACCTAAGAAGGTTGACCATCTCCCATCTACTCAAGAACCTATGAAGGAAAGGAGCCAATTTATAACTATACCTTAGCAGATG
Coding sequences of Glyma.06g021900
>Glyma.06g021900.1 sequence-type=CDS polypeptide=Glyma.06g021900.1.p locus=Glyma.06g021900 ID=Glyma.06g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAACCATAAACAAGGACCATATCGTCGATGAATCGAACCGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACGTGCAGAATCTTCCTCTGATCCCTCCTTCCGCCGTTGAAACCAACTTTGCCACTTACTTCGCCCTAGATTTTATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGCGTGATTGGGTTGGCTCCTTCCCACGTTGCTTTCAAGGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATGAAAGTCACTGGAAAGCGGAAGAAGCTTCTTCTTCTTCTCCTTTTAATAGGATGTGTTTTCGTGCAGAATGCACAACACTTTGAGTCCAATACGGCTTTGTGTAAAATTTCTACCAAAAATGATTCTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTGGAAGTCAATCAACAATTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGCTTACAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTAGTTAGCCTTCAGGAGTACAAGAAATTGAGGGAAGTCAATTGA

>Glyma.06g021900.2 sequence-type=CDS polypeptide=Glyma.06g021900.2.p locus=Glyma.06g021900 ID=Glyma.06g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAACCATAAACAAGGACCATATCGTCGATGAATCGAACCGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACGTGCAGAATCTTCCTCTGATCCCTCCTTCCGCCGTTGAAACCAACTTTGCCACTTACTTCGCCCTAGATTTTATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGCGTGATTGGGTTGGCTCCTTCCCACGTTGCTTTCAAGGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATGAAAGTCACTGGAAAGCGGAAGAAGAATGCACAACACTTTGAGTCCAATACGGCTTTGTGTAAAATTTCTACCAAAAATGATTCTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTGGAAGTCAATCAACAATTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGCTTACAGAGAAGGATACATTGCTATTATCATGCCAAAACCTGCTGATTGGCTCAAGGTCAAGGCTTCCCTAGTTAGCCTTCAGGAGTACAAGAAATTGAGGGAAGTCAATTGA

>Glyma.06g021900.3 sequence-type=CDS polypeptide=Glyma.06g021900.3.p locus=Glyma.06g021900 ID=Glyma.06g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAACCATAAACAAGGACCATATCGTCGATGAATCGAACCGTTCAGAAACCAAACTAGTCGAAGAGGAAGAGGAAGAGGAAGACTTACAGAAGCTTCTAGTCCCTGACGTGCAGAATCTTCCTCTGATCCCTCCTTCCGCCGTTGAAACCAACTTTGCCACTTACTTCGCCCTAGATTTTATGAAGCCAGCTCACGATCAGTACGTTTACCGCCACGCCAATGGCTTGTGCGTGATTGGGTTGGCTCCTTCCCACGTTGCTTTCAAGGATGAAGGTGGAATCACAGCCGTTGATTTCAATGTTGGAAAGTCTGATCGCAGCGGGATGAAAGTCACTGGAAAGCGGAAGAAGAATGCACAACACTTTGAGTCCAATACGGCTTTGTGTAAAATTTCTACCAAAAATGATTCTTATATTGTGAGATGTTGCGTCAAAGGCTCCCTTTTGGAAGTCAATCAACAATTAATCAAGCAGCCAGAACTGCTTAATGTTTCGGTGCTGTAG
Predicted protein sequences of Glyma.06g021900
>Glyma.06g021900.1.p sequence-type=predicted peptide transcript=Glyma.06g021900.1 locus=Glyma.06g021900 ID=Glyma.06g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTINKDHIVDESNRSETKLVEEEEEEEDLQKLLVPDVQNLPLIPPSAVETNFATYFALDFMKPAHDQYVYRHANGLCVIGLAPSHVAFKDEGGITAVDFNVGKSDRSGMKVTGKRKKLLLLLLLIGCVFVQNAQHFESNTALCKISTKNDSYIVRCCVKGSLLEVNQQLIKQPELLNVSAYREGYIAIIMPKPADWLKVKASLVSLQEYKKLREVN*

>Glyma.06g021900.2.p sequence-type=predicted peptide transcript=Glyma.06g021900.2 locus=Glyma.06g021900 ID=Glyma.06g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTINKDHIVDESNRSETKLVEEEEEEEDLQKLLVPDVQNLPLIPPSAVETNFATYFALDFMKPAHDQYVYRHANGLCVIGLAPSHVAFKDEGGITAVDFNVGKSDRSGMKVTGKRKKNAQHFESNTALCKISTKNDSYIVRCCVKGSLLEVNQQLIKQPELLNVSAYREGYIAIIMPKPADWLKVKASLVSLQEYKKLREVN*

>Glyma.06g021900.3.p sequence-type=predicted peptide transcript=Glyma.06g021900.3 locus=Glyma.06g021900 ID=Glyma.06g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTINKDHIVDESNRSETKLVEEEEEEEDLQKLLVPDVQNLPLIPPSAVETNFATYFALDFMKPAHDQYVYRHANGLCVIGLAPSHVAFKDEGGITAVDFNVGKSDRSGMKVTGKRKKNAQHFESNTALCKISTKNDSYIVRCCVKGSLLEVNQQLIKQPELLNVSVL*






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