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Report for Sequence Feature Glyma.06g021100

Feature Type:gene_model
Chromosome:Gm06
Start:1593986
stop:1597965
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g021100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76050.2AT Pseudouridine synthase family protein JGI N/AIEA
GO:0000455GO-bp enzyme-directed rRNA pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0009982GO-mf pseudouridine synthase activity EnsemblGenomesN/AIEA
GO:0009982GO-mf pseudouridine synthase activity JGI N/AIEA
GO:0019239GO-mf deaminase activity EnsemblGenomesN/AIEA
KOG1919 KOG RNA pseudouridylate synthases JGI N/AIEA
PTHR10436Panther RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN JGI N/AIEA
PTHR10436:SF39Panther JGI N/AIEA
PF00849PFAM RNA pseudouridylate synthase JGI N/AIEA
GN7V-67028SoyCyc9-rxn 23S rRNA pseudouridine1911/1915/1917 synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g021100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g021100 not represented in the dataset
Glyma.06g021100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g021100
ParalogEvidenceComments
Glyma.04g020900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g021100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.06g021100
>Glyma.06g021100.1 sequence-type=CDS polypeptide=Glyma.06g021100.1.p locus=Glyma.06g021100 ID=Glyma.06g021100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCGATGGAGAGCCAAAATTGAACTTCTCCGGTGTGCGGTTGGAGGAGGCCGTCGATAGCAGAATCGGATCTGGAAAACTCAGACTCGACAACTGGATCTCTTCCCGCATCAATGGCATTCGTAGGGCAAGAGTTCAATCAAGTATCAAATCAGGACTCGTTCATGTCAATGGCCGTGTGGTTGATAAGAATTTGAGGGCTGTGACAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTTTAGTCATAAATAAACCTGCACACATGTTAGATTCTCAATTTCATTATTTGGTCAATACATCGGGGATGCTTGTCAATGGTATTCTTCATCATTGCAACCTTCCAAATGTTGAATTTTCTAAAGAGGAGGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAATTCAATAGCTATCGCTCCCTGGCAAGTTTTTGTGAGGGGTTAAATTCTAGACTGTCTGTGGCATCAAATTCAATTCGCTCAGGGATTGTACACAGATTGGACAAAGGCACGAGTGGGTTACCTGTTGCAAAGGATGAACATTCACATATGAAATTGTCAGAGCAATTCAAGCAACATACCATCAAAAGGATTTATGTCAGTCTTACTGCTGGGCTACCCACTCCAGTTGCTGGGCGTGTTGAGGTTCCAGTTGGCCGTGATCCTAATAATCGGATTCGTATGACTGCTGTAGCTGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGGAGTTGTTCTTTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATACTTCATGACACAACTTTGAGGAAATGGTTCATGATTCGCACCTATGCTAAGTATTTGGGAGTTCCTCTACTGGGTGATGAGGTGTATGGAGGGACAAAAAACATGGTCTTCTCACTGCTAAGGCCCCGAACTCCCATCAGTTTGCATAGCAAAGTTGTAAAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGCAGACTTCGCTGAGATCTTGAGCCAGCTTCGTAGAATTGGTAGTGAGACCGTTTCTTTCTCAAAGCGTTCAAATTTATGA
Predicted protein sequences of Glyma.06g021100
>Glyma.06g021100.1.p sequence-type=predicted peptide transcript=Glyma.06g021100.1 locus=Glyma.06g021100 ID=Glyma.06g021100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
SDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGIRRARVQSSIKSGLVHVNGRVVDKNLRAVTENIPLDIVYEDEHVLVINKPAHMLDSQFHYLVNTSGMLVNGILHHCNLPNVEFSKEEEALSDTEDSDDEFNSYRSLASFCEGLNSRLSVASNSIRSGIVHRLDKGTSGLPVAKDEHSHMKLSEQFKQHTIKRIYVSLTAGLPTPVAGRVEVPVGRDPNNRIRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQILHDTTLRKWFMIRTYAKYLGVPLLGDEVYGGTKNMVFSLLRPRTPISLHSKVVKMVSRLDRPCLHALTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVSFSKRSNL*






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