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Report for Sequence Feature Glyma.06g019900

Feature Type:gene_model
Chromosome:Gm06
Start:1504441
stop:1508812
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g019900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76150.1AT enoyl-CoA hydratase 2 JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1206 KOG Peroxisomal multifunctional beta-oxidation protein and related enzymes JGI N/AIEA
PTHR13078Panther FAMILY NOT NAMED JGI N/AIEA
PTHR13078:SF5Panther PROTEIN MAOC-1 JGI N/AIEA
PF01575PFAM MaoC like domain JGI N/AIEA
LYSINE-DEG2-PWYSoyCyc9 lysine degradation II Plant Metabolic Network ISS
PWY-5080SoyCyc9 very long chain fatty acid biosynthesis I Plant Metabolic Network ISS
PWY-5138SoyCyc9 unsaturated, even numbered fatty acid β-oxidation Plant Metabolic Network ISS
PWY-7036SoyCyc9 very long chain fatty acid biosynthesis II Plant Metabolic Network ISS
PWY-7601SoyCyc9 arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) Plant Metabolic Network ISS
GN7V-64024SoyCyc9-rxn enoyl-CoA hydratase 2 Plant Metabolic Network ISS

Expression Patterns of Glyma.06g019900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g019900
ParalogEvidenceComments
Glyma.04g019600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g019900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g02250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g019900
>Glyma.06g019900.1 sequence-type=CDS polypeptide=Glyma.06g019900.1.p locus=Glyma.06g019900 ID=Glyma.06g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGTGCATCAGAGTTCGACCCAGCGCTTGCGCTTTCCCACAAATTCCCTGATACTACGTACTCTTATACCGAAAGGGATGCAGCACTTTATGCCCTAAGCGTAGGGGTGTGTTTGTCGGACGCTGTTGACGCTGATGAGCTTAAATATGTTTACCATGAAAATGGTCAGGAGTCTATCAAGGTCTTGCCTACGTTTTCTACTCTACTTGTACTTAGATCTGGGGCGAGTGGTTATAATCTCCCAGGCTTGAAATATGATCCACGTCTTCTGCTTCATGGACAACAATACATAGAATTATACAAACCACTTCCTTCAAGCTGTCATATACACAATAAAGTAAGCCTTGCCGGATTACATGATAAAGGTAAAGCAGCAATTTTGGAGATTGAAACAAAAAGCTACGAGAAAGAATCTGGTGATTTATTGTGCATGAACAGGACAACTGTCTTTCTACGGGGTTCTGGTGGCTTCTCAAAGTCATCTAAGCCATTTTCTTATACAAACTACCCTGTGAATCAGAATCCAGCTGTGAAAATTCCTGAAAGTAAACCTTTTTCGGTGTTTGAGGATCGAACCCAACCATCTCAGGCATTGCTCTATAGGCTATCTGGTGATTACAATCCTCTGCATTCAGATCCCATGGTTGCAAAGGTTGCCGGATTCTCGCGGCCAATATTGCATGGTCTGTGCACATTAGGATTTGCAGTTAGGGCAATCATCAAATGCATATGCAGAGGAGATCCAGACTTGGTAAAAAGCATAGCGGGCAGATTTCTTCTACATGTCTACCCTGGTGAAACTCTGGTTACTGAGATGTGGCTTGAAGGCTCAAGGGTTATATTTCGGACTAAGGTGAAAGAGCGAAAGCGGACAGTCCTTTCTGGCTACGTCGATCTGCGTGGTTTGACTTCGTCACTGTGA
Predicted protein sequences of Glyma.06g019900
>Glyma.06g019900.1.p sequence-type=predicted peptide transcript=Glyma.06g019900.1 locus=Glyma.06g019900 ID=Glyma.06g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSASEFDPALALSHKFPDTTYSYTERDAALYALSVGVCLSDAVDADELKYVYHENGQESIKVLPTFSTLLVLRSGASGYNLPGLKYDPRLLLHGQQYIELYKPLPSSCHIHNKVSLAGLHDKGKAAILEIETKSYEKESGDLLCMNRTTVFLRGSGGFSKSSKPFSYTNYPVNQNPAVKIPESKPFSVFEDRTQPSQALLYRLSGDYNPLHSDPMVAKVAGFSRPILHGLCTLGFAVRAIIKCICRGDPDLVKSIAGRFLLHVYPGETLVTEMWLEGSRVIFRTKVKERKRTVLSGYVDLRGLTSSL*






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