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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G42320.1 | AT | Zn-dependent exopeptidases superfamily protein | JGI | N/A | IEA |
GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
GO:0005615 | GO-cc | extracellular space | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
GO:0004181 | GO-mf | metallocarboxypeptidase activity | EnsemblGenomes | N/A | IEA |
GO:0004181 | GO-mf | metallocarboxypeptidase activity | JGI | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
KOG2650 | KOG | Zinc carboxypeptidase | JGI | N/A | IEA |
PTHR11705 | Panther | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B | JGI | N/A | IEA |
PTHR11705:SF3 | Panther | JGI | N/A | IEA | |
PF00246 | PFAM | Zinc carboxypeptidase | JGI | N/A | IEA |
Glyma.06g018200 not represented in the dataset |
Glyma.06g018200 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.04g017900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma06g02070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g018200.2 sequence-type=transcript locus=Glyma.06g018200 ID=Glyma.06g018200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ttttcttgtctgttttctttTGGCAGGACAGATCACGTTTTCTTTCACCGTTAAATTTAGGTTACGATTTTGTTGAATGAATATCAAGGGACGTTTTCTTGATTGATAGCTTTCCTGTGTGTTTGTGACAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAAAATTATGTCGTAGGTTAAACTGTATATCCAATTTTGAGGGAAAAAAATTGTAAGTTAAATTGCTGTCTGTATTACTAAGTAACGCGAGCCTTTTTTTCTGAGGCCATACAATCTAATTCTTTAAAAGTGCCCAATTCAAGGACTGGGGGCTGTGTTGTAAACGAATGTATAAAGGTGTTTGTTATACTGAACGTCAATCC >Glyma.06g018200.3 sequence-type=transcript locus=Glyma.06g018200 ID=Glyma.06g018200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTCCTCAAGGTAGAATCAAACCTGTGAGCATTTATTTAAATCACGTAAACTGGTATTTCAATGTGATTTTGGATGATCCAATGATCTAAGTGACAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAAAATTATGTCGTAGGTTAAACTGTATATCCAATTTTGAGGGAAAAAAATTGTAAGTTAAATTGCTGTCTGTATTACTAAGTAACGCGAGCCTTTTTTTCTGAGGCCATACAATCTAATTCTTTAAAAGTGCCCAATTCAAGGACTGGGGGCTGTGTTGTAAACGAATGTATAAAGGTGTTTGTTATACTGAACGTCAATCC
>Glyma.06g018200.1 sequence-type=CDS polypeptide=Glyma.06g018200.1.p locus=Glyma.06g018200 ID=Glyma.06g018200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCTTTCCATTTTTCAATTTCTTCTGTTCTCAATCAGCCTCTGCTTCCTCGCTTCTTCTTTTCAAGATCTTCTTCTTCTCTCCGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTACGATCTCTACCATTCCAGTGACAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAA >Glyma.06g018200.2 sequence-type=CDS polypeptide=Glyma.06g018200.2.p locus=Glyma.06g018200 ID=Glyma.06g018200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAA >Glyma.06g018200.3 sequence-type=CDS polypeptide=Glyma.06g018200.3.p locus=Glyma.06g018200 ID=Glyma.06g018200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCGGATAAACTCACTACGGAGACAATTAAAGCTGGAAATAAAGGCTATGGTGCGGAGGTTACAGTGGTTACTTATTGCAAGGAAAAGAAAGGCAATGATGAGAGGTCGAAGCTTAGAATTCTTATTAGTTTTGGGCAGCATGGAAGAGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAAATTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATAAAGGTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGAAATTGGAGTGTAGATTGGGGAAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGGCTCTTTTTATGCCTTACGATCATAAAAATTCAACACCAGATGGATTGCCTATGCAACGGATGAGATCATTGCTTGAAGAAGTAAACCAACTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCATCGACCTTGCCACCTACAATAGAGTTCTCAGTGACTGGTCGGCAACATTCTTTACAATTTTCAAATTGGTGCCGCAGAAGCTTGGTGATTCAAAAGCGTCTATTTTGAAGCTAGATAAGTTAGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGATGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGTAAGTGTAGACCAATTGTTTCAGCTATACCCCTCTAA
>Glyma.06g018200.1.p sequence-type=predicted peptide transcript=Glyma.06g018200.1 locus=Glyma.06g018200 ID=Glyma.06g018200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALSIFQFLLFSISLCFLASSFQDLLLLSVNAQSHNLTQPSVTPINYDLYHSSDNLMEEIRALVHRHPDKLTTETIKAGNKGYGAEVTVVTYCKEKKGNDERSKLRILISFGQHGRELITTELALRILSILSEEKILPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPHLWVNVHSGMEALFMPYDHKNSTPDGLPMQRMRSLLEEVNQLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPIDLATYNRVLSDWSATFFTIFKLVPQKLGDSKASILKLDKLVSIDEYLDGYLMERRNRYGKKMEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL* >Glyma.06g018200.2.p sequence-type=predicted peptide transcript=Glyma.06g018200.2 locus=Glyma.06g018200 ID=Glyma.06g018200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEEIRALVHRHPDKLTTETIKAGNKGYGAEVTVVTYCKEKKGNDERSKLRILISFGQHGRELITTELALRILSILSEEKILPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPHLWVNVHSGMEALFMPYDHKNSTPDGLPMQRMRSLLEEVNQLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPIDLATYNRVLSDWSATFFTIFKLVPQKLGDSKASILKLDKLVSIDEYLDGYLMERRNRYGKKMEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL* >Glyma.06g018200.3.p sequence-type=predicted peptide transcript=Glyma.06g018200.3 locus=Glyma.06g018200 ID=Glyma.06g018200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEEIRALVHRHPDKLTTETIKAGNKGYGAEVTVVTYCKEKKGNDERSKLRILISFGQHGRELITTELALRILSILSEEKILPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPHLWVNVHSGMEALFMPYDHKNSTPDGLPMQRMRSLLEEVNQLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPIDLATYNRVLSDWSATFFTIFKLVPQKLGDSKASILKLDKLVSIDEYLDGYLMERRNRYGKKMEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||