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Report for Sequence Feature Glyma.06g018000

Feature Type:gene_model
Chromosome:Gm06
Start:1359828
stop:1368182
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g018000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36390.1AT starch branching enzyme 2.1 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005978GO-bp glycogen biosynthetic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003844GO-mf 1,4-alpha-glucan branching enzyme activity EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0043169GO-mf cation binding EnsemblGenomesN/AIEA
GO:0043169GO-mf cation binding JGI N/AIEA
KOG0470 KOG 1,4-alpha-glucan branching enzyme/starch branching enzyme II JGI N/AIEA
PTHR10357Panther ALPHA-AMYLASE JGI N/AIEA
PTHR10357:SF27Panther JGI N/AIEA
PF02806PFAM Alpha amylase, C-terminal all-beta domain JGI N/AIEA
PF02922PFAM Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JGI N/AIEA
GN7V-64150SoyCyc9-rxn 1,4-α-glucan branching enzyme Plant Metabolic Network ISS

Expression Patterns of Glyma.06g018000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g018000 not represented in the dataset
Glyma.06g018000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g018000
ParalogEvidenceComments
Glyma.04g017700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g018000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g02051 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g018000
>Glyma.06g018000.1 sequence-type=CDS polypeptide=Glyma.06g018000.1.p locus=Glyma.06g018000 ID=Glyma.06g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGTGAGAAGTAAGCAGTATCTTGTGACACAAAAGCCAGTAGATCTGGCTCTTGGCTATCGGAATCCACATGGATACGGGTTCTGTTTTGCATTGAGAAGATCAATACAAGAGGGGGTGACATCTCATTTCAAGGGCAGAGCTGTTATGACAGATGACAAATCAACAATGTCATCCACTGAGGAAGACTTAGAAAACATTGGCATCTTTCGTATTTGTCCATCCCTAAAGCCATATAAAGATCACTTCAAATATAGAATGAAGAGATATGTAGATCAGAAAAAGCTTATTGAAGAATATGAAGGAGGTCTTGAGGAATTTGCTCAAGCTACTTTTCCCGTCTATCGTAACAGTGTCTATGGTAGATGGGAAGCACAAATTATTGGAGACTTTAATGGATGGGATGGTTCCAACCACCAGATAAAAAATCAGTTTGGTGTTTGGAGTATTAAGATCCCTGATACTGACGGAAATTCAGCTATACCACACAATTCAAGAGTGAAGTTTAGATTTAGACACGGGGATGGAGTTTGGGTTGATCGCATCTCTGCTTGGATCAAATATGCCACTCCATACGATGGTGTCTACTGGGATCCACCCCTTTCAGAGAGGTATCAATTTAAATATCCTCGTCCACCAAAGCCAAAGACCCCACGGATATATGAGGCTCATGTGGGGATGAGTAGCTCTGAACCCCGCATAAACTCTTACAGGGAATTTGCAGATGAGATTTTGCCCCATATTTGGGCAAATAACTATAATACAGTCCAGCTGATGGCCGTGATGGAGCATTCCTATTATGCATCATTTGGATATCATGTAACAAATTTTTTTGCTGTGAGCAGTAGATCAACCCCTGAAGATCTAAAGTATCCGATAGATAAGGCCCATAGCCTAGGTTTGCAGGTTTTGATGGATGTTATCCATAGTCTTGCTAGTAATAATGTTACTGATGGACTCAATGGCTTTGATGTTGGCCAAACTTCGCAAGATTCTTACTTCCATACTGGAGATAGAGGCTATCATAAATTGTGGGATAGTAGACTCTTTAACTATGCTAACTGGGAAGTTCTTCGTTTCCTTTTATCGAATTTAAGGTGGTGGCTTCATGAGCTTAAATTTGATGGATTTCGATTTGATGGAGTAACATCAATGCTGTATCATCACCATGGAATCAACATTGTATTTACAGGGGATTATAATGAATATTTTAGTGAAGCAACAGATGTGGTGCTGTATATTTTGCCAGATGCAACTGTCATTGCTGAAGATGTTTCTGGCATGCCTGGACTTGGTCAACCAGTTTCTGATGGTGGAATTGGTTTTGACTATCGTCTAGCCATGGCAATCCCTGATAAATGGATTGATTACTTGAAGAACAAGAACGACTATGCATGGTCAATGAAGGAAATCTCTTGGAGTTTGACAAATAGGAGATACACTGAGAAATGTGTTTCCTATGCTGAAAGCCATGACCAGATGATACACTTCATAACAATGGCATTAGGTGGAGAGGGCTACCTTAATTTCATGGGCAATGAGTTTGGCCATCCAGAGTGGATTGATTTCCCAAGAGAAGGCAATGGATGGAGTAATGAGAAGTGCAGGCTGTGTTGCTTGTCTGAGATATATGTTATAATTTTGTTTTTGGAACTTGTGCAGTTCATGAATGCATTTGACAGAGCAATGAACTTGCTTGATGATAACTTCTCATTCCTTGCATCAACAAAACAGATTGTGAGCAGTGCAGATGACGATGACAAGGTGAATATGCTCCCAAATGATTGTTATATAGTCTTTGAGCGAGGAGATCTGATATTTGTGTTCAATTTTCATCCAGAGAATACATATGAAGGGTATAAAGTTGGATGTGACTTGCCTGGAAAGTATAGAGTTGTATTGGATAGTGATGCTTGGGAATTTGGAGGACATGGAAGAGTAAGGAGCCCTAATCTCTCTGGCGATGGATATGGATGA
Predicted protein sequences of Glyma.06g018000
>Glyma.06g018000.1.p sequence-type=predicted peptide transcript=Glyma.06g018000.1 locus=Glyma.06g018000 ID=Glyma.06g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
IVRSKQYLVTQKPVDLALGYRNPHGYGFCFALRRSIQEGVTSHFKGRAVMTDDKSTMSSTEEDLENIGIFRICPSLKPYKDHFKYRMKRYVDQKKLIEEYEGGLEEFAQATFPVYRNSVYGRWEAQIIGDFNGWDGSNHQIKNQFGVWSIKIPDTDGNSAIPHNSRVKFRFRHGDGVWVDRISAWIKYATPYDGVYWDPPLSERYQFKYPRPPKPKTPRIYEAHVGMSSSEPRINSYREFADEILPHIWANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSTPEDLKYPIDKAHSLGLQVLMDVIHSLASNNVTDGLNGFDVGQTSQDSYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWLHELKFDGFRFDGVTSMLYHHHGINIVFTGDYNEYFSEATDVVLYILPDATVIAEDVSGMPGLGQPVSDGGIGFDYRLAMAIPDKWIDYLKNKNDYAWSMKEISWSLTNRRYTEKCVSYAESHDQMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSNEKCRLCCLSEIYVIILFLELVQFMNAFDRAMNLLDDNFSFLASTKQIVSSADDDDKVNMLPNDCYIVFERGDLIFVFNFHPENTYEGYKVGCDLPGKYRVVLDSDAWEFGGHGRVRSPNLSGDGYG*






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