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Report for Sequence Feature Glyma.06g013900

Feature Type:gene_model
Chromosome:Gm06
Start:1052183
stop:1060487
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g013900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76510.1AT ARID/BRIGHT DNA-binding domain-containing protein JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001228GO-mf transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
KOG2744 KOG DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain JGI N/AIEA
PTHR15348Panther AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN (ARID DOMAIN- CONTAINING PROTEIN) (DEAD RINGER PROTEIN) (B-CELL REGULATOR OF IGH TRANSCRIPTION) (BRIGHT) JGI N/AIEA
PF01388PFAM ARID/BRIGHT DNA binding domain JGI N/AIEA

Expression Patterns of Glyma.06g013900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g013900
ParalogEvidenceComments
Glyma.04g014100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g013900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g01640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g013900
>Glyma.06g013900.1 sequence-type=CDS polypeptide=Glyma.06g013900.1.p locus=Glyma.06g013900 ID=Glyma.06g013900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGATGGTGAGAAACCCAGCCATGGCATTGCTGATATGGATGTTGTTGATGCCACTTTGCAAAGCCATCGTGTGGCTTCTGATCAAGTAATGGTCCTACAGGGTCATGATATCAAAAACGGCGATTCTGATCCTGCTCACGTGCCAGCAACCAGTGCAATTAGCAATAATCAGTTTGAACTTGAAGATGCTAAGACTGTTTCGCATCAGGAACTGATCACTCCAAAGCCTAAAGAAAAGAATGTCAGAGAAATGAAGAATGTGCTAAATGATACCGAGATGACTGATTATGATGAGTATGGCACGCCTCTGGATCGAGAAACATTTATGAAAGAGCTTGAGACTTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTCAATTGTCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGCGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACAGTCTCATGGACATTTAGAATTTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCACAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGACCATTCCATCAATCTTCAAATGTGGAAAAAGAGCCTGCTGTTTACCAGACTCCAGGCTCAGGTAGAGCAAGAAGGGATGCAGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACGCCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGAATAATAAACAGAGGACACTGTCTGGTCTGGAGCATGCTGAAAAATCTGCAAATATTGAAGGAGATCGGCAATTGGTCACAGCAGTAGTGGATGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGTGAAAGTAAGGATTGTTTTGAGGTATATGCCCTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTGTGCCAGAACATATAGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATTCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAAGGAGCTGTGTGA
Predicted protein sequences of Glyma.06g013900
>Glyma.06g013900.1.p sequence-type=predicted peptide transcript=Glyma.06g013900.1 locus=Glyma.06g013900 ID=Glyma.06g013900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGEKPSHGIADMDVVDATLQSHRVASDQVMVLQGHDIKNGDSDPAHVPATSAISNNQFELEDAKTVSHQELITPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGPFHQSSNVEKEPAVYQTPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMNNKQRTLSGLEHAEKSANIEGDRQLVTAVVDVGPPADWVKINVRESKDCFEVYALVPGLLREEVRVQSDPVGRLVITGVPEHIDNPWGITPFKKVVNLPARIDSLQTSAVVSLHGRLFVRVPFEQGAV*






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