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Report for Sequence Feature Glyma.06g010600

Feature Type:gene_model
Chromosome:Gm06
Start:828070
stop:833094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g010600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34570.1AT thymidylate synthase 2 JGI N/AIEA
GO:0006231GO-bp dTMP biosynthetic process EnsemblGenomesN/AIEA
GO:0006231GO-bp dTMP biosynthetic process JGI N/AIEA
GO:0006545GO-bp glycine biosynthetic process EnsemblGenomesN/AIEA
GO:0006545GO-bp glycine biosynthetic process JGI N/AIEA
GO:0006730GO-bp one-carbon metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0009165GO-bp nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0009165GO-bp nucleotide biosynthetic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0046654GO-bp tetrahydrofolate biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004146GO-mf dihydrofolate reductase activity EnsemblGenomesN/AIEA
GO:0004146GO-mf dihydrofolate reductase activity JGI N/AIEA
GO:0004799GO-mf thymidylate synthase activity EnsemblGenomesN/AIEA
GO:0004799GO-mf thymidylate synthase activity JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0673 KOG Thymidylate synthase JGI N/AIEA
PTHR11549Panther DIHYDROFOLATE REDUCTASE JGI N/AIEA
PTHR11549:SF2Panther THYMIDYLATE SYNTHASE JGI N/AIEA
PF00186PFAM Dihydrofolate reductase JGI N/AIEA
PF00303PFAM Thymidylate synthase JGI N/AIEA
PWY-3841SoyCyc9 folate transformations II Plant Metabolic Network ISS
PWY-6614SoyCyc9 tetrahydrofolate biosynthesis Plant Metabolic Network ISS
PWY-7184SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7187SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis II Plant Metabolic Network ISS
PWY-7199SoyCyc9 pyrimidine deoxyribonucleosides salvage Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-166SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) Plant Metabolic Network ISS
GN7V-59039SoyCyc9-rxn dihydrofolate reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.06g010600
LocusGene SymbolProtein Name
DHFR-TS bifunctional dihydrofolate reductase-thymidylate synthase

Expression Patterns of Glyma.06g010600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g010600
ParalogEvidenceComments
Glyma.04g010800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g010600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g01280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g010600
>Glyma.06g010600.1 sequence-type=CDS polypeptide=Glyma.06g010600.1.p locus=Glyma.06g010600 ID=Glyma.06g010600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCAGTTTCTGTTCTTTTCTAACAATTTCTCTGCACTTCCCAAAGAATTGGTTGTGCAGTCCTTGTTTTCAGACACCGTCTTTAAGTTACTGTCGACGTTTGAGTTCTATAATGCCCAGTGATTCTTCTGTAATCTCCAATGGACACAGCAATGGCAGTGTCAATCCACTACCTAACCTGCAAAGGACTTACCAAGTGGTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCTACTGATCTCAAGTTTTTTAAGGAGATCACTATGAAAACATCTGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGCATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGAAGTTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCTTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTTTTTGTTATAGGGGGTGGTCAGATATTTAGAGAGGCTCTCAATGTGCCTGGATGTGAAGCTATCCACTTAACGGAAATTCAGTCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATATTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTCTTTCACCACTTATGTGCGTGTACGGAGTTCTGCTGCAGAGTCCGCGGGTCAGAACATTGATCCACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGATTTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCGTGGAAACTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGCGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGCCAAGGGTTTGATCAACTTTTAGATGTTATTAACAAGATAAAGCGTAATCCTGATGATCGGCGAATCATTCTCTCTGCATGGAATCCAGTGGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCTGGTGATTTTATTCATGTTATTGGGGATGCTCATATTTACCGCAATCACGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAGCCTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGTCTGTCTAA
Predicted protein sequences of Glyma.06g010600
>Glyma.06g010600.1.p sequence-type=predicted peptide transcript=Glyma.06g010600.1 locus=Glyma.06g010600 ID=Glyma.06g010600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFSFCSFLTISLHFPKNWLCSPCFQTPSLSYCRRLSSIMPSDSSVISNGHSNGSVNPLPNLQRTYQVVVAATQDWGIGKDGKLPWRLPTDLKFFKEITMKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNVPGCEAIHLTEIQSSIECDTFMPPVDFTIFRPWYSSFPKVENNIRYSFTTYVRVRSSAAESAGQNIDPLLDNNSESMKFEVKDFSFLPKMISERHEEYLYLKLVQDIIAEGTTKGDRTGTGTLSKFGCQMRFNLRGNFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKRNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHIYRNHVRPLQEQLHNQPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKLSV*






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