SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g009800

Feature Type:gene_model
Chromosome:Gm06
Start:765311
stop:768672
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g009800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39120.1AT myo-inositol monophosphatase like 2 JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0046854GO-bp phosphatidylinositol phosphorylation EnsemblGenomesN/AIEA
GO:0046854GO-bp phosphatidylinositol phosphorylation JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004401GO-mf histidinol-phosphatase activity EnsemblGenomesN/AIEA
KOG2951 KOG Inositol monophosphatase JGI N/AIEA
PTHR20854Panther INOSITOL MONOPHOSPHATASE JGI N/AIEA
PTHR20854:SF12Panther JGI N/AIEA
PF00459PFAM Inositol monophosphatase family JGI N/AIEA
HISTSYN-PWYSoyCyc9 L-histidine biosynthesis Plant Metabolic Network ISS
PWY-2301SoyCyc9 myo-inositol biosynthesis Plant Metabolic Network ISS
PWY-4702SoyCyc9 phytate degradation I Plant Metabolic Network ISS
PWY-6363SoyCyc9 D-myo-inositol (1,4,5)-trisphosphate degradation Plant Metabolic Network ISS
PWY-882SoyCyc9 L-ascorbate biosynthesis I (L-galactose pathway) Plant Metabolic Network ISS
GN7V-41122SoyCyc9-rxn histidinol-phosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.06g009800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g009800
ParalogEvidenceComments
Glyma.04g009800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g009800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g01210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g009800
>Glyma.06g009800.2 sequence-type=transcript locus=Glyma.06g009800 ID=Glyma.06g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATACAGTCTACATAACGCAATTTCTTTATCTTTTTCAAAATACTGAGATTGGGATTAATTTTGGGTTGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCAGTCCCCAATACCCAATAATAGTGCCTTTCGTCTGAGAGCCATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCACTGATACCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAGGTTTCTCCACTTTCAATCCCAACATGTTTTAATGTTGTGGCCGCCGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAACCTTAGGTGCAAATAGTCTTGGTTCAGATGTTCCAGAGGACATGTATATTCGGCATTTAAGTTGAAAACCGTGCACTCAGAATCTTGAATAAGTACACCTGCAGAAGTTAACCTCTTTCTGGATTGGATGGTCACGAGCTCTTCAACACCTTATAGCATCAACACCTTATAGCAAGTTCCAAAATAAAATTTTCTGTAAGTTAGAATTCCATGGTATTGTAATAATTTTCTGTAAGTTAATGATTCTTCCCAAGTCCTGTTTTAAAATAGATTGATGAAATTAATATAAAGCAAACGCTAACGGCCAAAATAATCTAGTTTTATGCTTGAGTTATGGACAAATTATTATTATTAGAAAAGTATAAAATTAGTAGGCAAAGTACG

>Glyma.06g009800.3 sequence-type=transcript locus=Glyma.06g009800 ID=Glyma.06g009800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATACAGTCTACATAACGCAATTTCTTTATCTTTTTCAAAATACTGAGATTGGGATTAATTTTGGGTTGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCAGTCCCCAATACCCAATAATAGTGCCTTTCGTCTGAGAGCCATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCACTGATACCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAGGTTTCTCCACTTTCAATCCCAACATCAGGTTTTAATGTTGTGGCCGCCGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAACCTTAGGTGCAAATAGTCTTGGTTCAGATGTTCCAGAGGACATGTATATTCGGCATTTAAGTTGAAAACCGTGCACTCAGAATCTTGAATAAGTACACCTGCAGAAGTTAACCTCTTTCTGGATTGGATGGTCACGAGCTCTTCAACACCTTATAGCATCAACACCTTATAGCAAGTTCCAAAATAAAATTTTCTGTAAGTTAGAATTCCATGGTATTGTAATAATTTTCTGTAAGTTAATGATTCTTCCCAAGTCCTGTTTTAAAATAGATTGATGAAATTAATATAAAGCAAACGCTAACGGCCAAAATAATCTAGTTTTATGCTTGAGTTATGGACAAATTATTATTATTAGAAAAGTATAAAATTAGTAGGCAAAGTACG

>Glyma.06g009800.4 sequence-type=transcript locus=Glyma.06g009800 ID=Glyma.06g009800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATACAGTCTACATAACGCAATTTCTTTATCTTTTTCAAAATACTGAGATTGGGATTAATTTTGGGTTGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCAGTCCCCAATACCCAATAATAGTGCCTTTCGTCTGAGAGCCATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCACTGATACCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAGGTTTCTCCACTTTCAATCCCAACATGTTTTAATGTTGTGGCCGCCGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAACCTTAGGTGCAAATAGTCTTGGTTCAGATGTTCCAGAGGACATGTATATTCGGCATTTAAGTTGAAAACCGTGCACTCAGAATCTTGAATAAGTACACCTGCAGAAGTTAACCTCTTTCTGGATTGGATGGTCACGAGCTCTTCAACACCTTATAGCATCAACACCTTATAGCAAGTTCCAAAATAAAATTTTCTGTAAGTTAGAATTCCATGGTATTGTAATAATTTTCTGTAAGTTAATGATTCTTCCCAAGTCCTGTTTTAAAATAGATTGATGAAATTAATATAAAGCAAACGCTAACGGCCAAAATAATCTAGTTTTATGCTTGAGTTATGGACAAATTATTATTATTAGAAAAGTATAAAATTAGTAGGCAAAGTACG
Coding sequences of Glyma.06g009800
>Glyma.06g009800.1 sequence-type=CDS polypeptide=Glyma.06g009800.1.p locus=Glyma.06g009800 ID=Glyma.06g009800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCACTGATACCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAGGTTTCTCCACTTTCAATCCCAACATCAGGTTTTAATGTTGTGGCCGCCGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

>Glyma.06g009800.2 sequence-type=CDS polypeptide=Glyma.06g009800.2.p locus=Glyma.06g009800 ID=Glyma.06g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCACTGATACCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAGGTTTCTCCACTTTCAATCCCAACATGTTTTAATGTTGTGGCCGCCGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

>Glyma.06g009800.3 sequence-type=CDS polypeptide=Glyma.06g009800.3.p locus=Glyma.06g009800 ID=Glyma.06g009800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGA

>Glyma.06g009800.4 sequence-type=CDS polypeptide=Glyma.06g009800.4.p locus=Glyma.06g009800 ID=Glyma.06g009800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTCACAGCTCGCCTCTTGAACTCAATCACTTCGCCGAGGTCGGTAACAAAGTTGCCGATGCTGCCGGAGAAATTATTCGCAAATACTTCAGGAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCTGATCAATCGGCTGAGGAGGCTATGGTTTCAATCATACTAGACAGTTTCCCTTCTCATGCTATTTATGGAGAGGAAAATGGTTGGAGGTGTAAAGAAAAGAATACTGATTATGTTTGGGTATTAGATCCCATAGACGGGACAAAGAGCTTTATTACTGGAAAACCCGTATTTGGTAGTCTCGTTGCTCTTCTACAAAATGGCACCCCAATTCTTGGCATAATTGATCAACCTGTGTTACGAGAAAGGTGGATCGGGATAACTGGAAAGAGAACTACACTGAACGGACAAGAAATATCTACACGCACTTGTATACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAAAGGCATTCATCCGTGTTAGAAGCAAGGTTAAAATTCCCTTATATGGTTGTGACTGCTATGCATATGCTCTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGA
Predicted protein sequences of Glyma.06g009800
>Glyma.06g009800.1.p sequence-type=predicted peptide transcript=Glyma.06g009800.1 locus=Glyma.06g009800 ID=Glyma.06g009800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPHSSPLELNHFAEVGNKVADAAGEIIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDSFPSHAIYGEENGWRCKEKNTDYVWVLDPIDGTKSFITGKPVFGSLVALLQNGTPILGIIDQPVLRERWIGITGKRTTLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEKAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEVSPLSIPTSGFNVVAAGDKQIHQQALDSLQWK*

>Glyma.06g009800.2.p sequence-type=predicted peptide transcript=Glyma.06g009800.2 locus=Glyma.06g009800 ID=Glyma.06g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPHSSPLELNHFAEVGNKVADAAGEIIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDSFPSHAIYGEENGWRCKEKNTDYVWVLDPIDGTKSFITGKPVFGSLVALLQNGTPILGIIDQPVLRERWIGITGKRTTLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEKAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEVSPLSIPTCFNVVAAGDKQIHQQALDSLQWK*

>Glyma.06g009800.3.p sequence-type=predicted peptide transcript=Glyma.06g009800.3 locus=Glyma.06g009800 ID=Glyma.06g009800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPHSSPLELNHFAEVGNKVADAAGEIIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDSFPSHAIYGEENGWRCKEKNTDYVWVLDPIDGTKSFITGKPVFGSLVALLQNGTPILGIIDQPVLRERWIGITGKRTTLNGQEISTRTCIPQAHICSVEMQKRHSSVLEARLKFPYMVVTAMHMLFCLLVLWILLLSLV*

>Glyma.06g009800.4.p sequence-type=predicted peptide transcript=Glyma.06g009800.4 locus=Glyma.06g009800 ID=Glyma.06g009800.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPHSSPLELNHFAEVGNKVADAAGEIIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDSFPSHAIYGEENGWRCKEKNTDYVWVLDPIDGTKSFITGKPVFGSLVALLQNGTPILGIIDQPVLRERWIGITGKRTTLNGQEISTRTCIPQAHICSVEMQKRHSSVLEARLKFPYMVVTAMHMLFCLLVLWILLLSLV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo