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Report for Sequence Feature Glyma.06g009700

Feature Type:gene_model
Chromosome:Gm06
Start:762125
stop:764892
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g009700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43010.1AT regulatory particle triple-A ATPase 4A JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0030433GO-bp ubiquitin-dependent ERAD pathway EnsemblGenomesN/AIEA
GO:0045899GO-bp positive regulation of RNA polymerase II transcriptional preinitiation complex assembly EnsemblGenomesN/AIEA
GO:1901800GO-bp positive regulation of proteasomal protein catabolic process EnsemblGenomesN/AIEA
GO:0008540GO-cc proteasome regulatory particle, base subcomplex EnsemblGenomesN/AIEA
GO:0031595GO-cc nuclear proteasome complex EnsemblGenomesN/AIEA
GO:0031597GO-cc cytosolic proteasome complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0009378GO-mf four-way junction helicase activity JGI N/AIEA
GO:0017025GO-mf TBP-class protein binding EnsemblGenomesN/AIEA
GO:0036402GO-mf proteasome-activating ATPase activity EnsemblGenomesN/AIEA
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI N/AIEA
PTHR23073Panther 26S PROTEASE REGULATORY SUBUNIT JGI N/AIEA
PTHR23073:SF10Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA

Expression Patterns of Glyma.06g009700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.06g009700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g01200 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g009700
>Glyma.06g009700.1 sequence-type=CDS polypeptide=Glyma.06g009700.1.p locus=Glyma.06g009700 ID=Glyma.06g009700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGAAATTTTACGACGTCTTTCTGCGGTGGCCGAGTATCGAAGAAAGTTTTACCTTTGTCAAATAATCCATTACAGAATCCGAGCAGCCAAAAGGGTTTTGCGGGATGCAAAGAAGGAATATGCGACAACTCAGTCCCTGAGGAGGGGTGGCCAACTCGTTACTCTTGTTGAAGGGCCTTATAATGATCACAATCAACGCTTTATAGTAAAATCAAGCAGTGGAGCAGATAGACATATAGTTGGCATTCATAGTAAGGTGGAGAAGGAGAAGCTAGTTCCAGGCACAAGAGTTAGCCTGGATAGGACTACCATGACCATTATGAGAATTCTTCCGCCCCAAGTTGACCCTTTTGTGTATAACATGATTCATGAAGACCCTATAAATGCTAATTACTCTGCACTTAGAGAGCTTACAGAACAGATTCGAGAACACGGGGAATCGATTGAACTGCCTCCTGAGCTTAATCTCAAGGTTATGTGGGACACGGGACATGTTAAGTACGCTGCAGTTGGAGGGCTTTCAGATCAGATTCGACAACTCAGGGAATCGATTGAGCTGCCTTTAACGAATCCTGAGCTTTTTCTCAGGGTTGGAATTGGAATGAAACTCCCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGCAAGACATTATTAGCAAAAGCAATTTCCTGCAACGTAGATGCTAAATTCTTGAAGGTTGTATCTAGTACTATAATTCATAAATCTATTGGTGAAAGTGCAAGATTAATTAGGGAAATGTTTAAATATGCCCGCAATCATCAGCCTTGCATCATATTCATGGATGAGATTGATGCCATTGCTGGACGACGTTCCAGTAACCGCAAAGGTTCTGATCGTGAAATTCAAAGAACCCTCAAGGAGCTGCTTAACCAGCTGGATGGATTAAATCATCTTGAAAAGGTCAAAATAATTATGGCTACAAATAGGCTTGATGTTCTTGACCCGGCTCTTCTTCGTCATGGTCGAATTGATCGGAAAATTGAAATTACATTACCAAATAGGAAGTCAAGGATGGAAATCTTCAAAATCCATGCAGAAGGAGTTACAAAACGTGGTGAAATTGACTATGAAGCAGTTGTGAAGCTTGCTGAGGGGTTCAATGGTGCTGATCTTCGTAATGTTTGTACTGAAGCTGGTCTGTTTGCTATTCGTGCAGAACGTGATTATGTTATTCATGGAGATTTCATCAAGGGTGTGCGCAAACTGAATGAAGCAAAGAAACTGGAATCAAGCCCCTGA
Predicted protein sequences of Glyma.06g009700
>Glyma.06g009700.1.p sequence-type=predicted peptide transcript=Glyma.06g009700.1 locus=Glyma.06g009700 ID=Glyma.06g009700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEILRRLSAVAEYRRKFYLCQIIHYRIRAAKRVLRDAKKEYATTQSLRRGGQLVTLVEGPYNDHNQRFIVKSSSGADRHIVGIHSKVEKEKLVPGTRVSLDRTTMTIMRILPPQVDPFVYNMIHEDPINANYSALRELTEQIREHGESIELPPELNLKVMWDTGHVKYAAVGGLSDQIRQLRESIELPLTNPELFLRVGIGMKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYARNHQPCIIFMDEIDAIAGRRSSNRKGSDREIQRTLKELLNQLDGLNHLEKVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYEAVVKLAEGFNGADLRNVCTEAGLFAIRAERDYVIHGDFIKGVRKLNEAKKLESSP*






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