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Report for Sequence Feature Glyma.06g007400

Feature Type:gene_model
Chromosome:Gm06
Start:561498
stop:563749
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g007400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38920.1AT vacuolar-type H(+)-ATPase C3 JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0007035GO-bp vacuolar acidification EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport EnsemblGenomesN/AIEA
GO:0015991GO-bp ATP hydrolysis coupled proton transport JGI N/AIEA
GO:0000220GO-cc vacuolar proton-transporting V-type ATPase, V0 domain EnsemblGenomesN/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0005774GO-cc vacuolar membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0033177GO-cc proton-transporting two-sector ATPase complex, proton-transporting domain EnsemblGenomesN/AIEA
GO:0033177GO-cc proton-transporting two-sector ATPase complex, proton-transporting domain JGI N/AIEA
GO:0033179GO-cc proton-transporting V-type ATPase, V0 domain EnsemblGenomesN/AIEA
GO:0015078GO-mf proton transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015078GO-mf hydrogen ion transmembrane transporter activity JGI N/AIEA
GO:0046961GO-mf proton-transporting ATPase activity, rotational mechanism EnsemblGenomesN/AIEA
KOG0232 KOG Vacuolar H+-ATPase V0 sector, subunits c/c' JGI N/AIEA
PTHR10263Panther V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT JGI N/AIEA
PF00137PFAM ATP synthase subunit C JGI N/AIEA

Expression Patterns of Glyma.06g007400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g007400
ParalogEvidenceComments
Glyma.04g007500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g007400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g00980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g007400
>Glyma.06g007400.1 sequence-type=CDS polypeptide=Glyma.06g007400.1.p locus=Glyma.06g007400 ID=Glyma.06g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCCTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTTGGCGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACCGGTATTAATCCAAAGGCCAAATCCTATTACCTCTTTGATGGTTATGCACATCTCTCTTCTGGTCTTGCCTGTGGCTTGGCTGGCCTTTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCCGGTGTTAGAGCCAATGCACAACAACCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCACTTGCCCTTTATGGTCTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCCGACTAA
Predicted protein sequences of Glyma.06g007400
>Glyma.06g007400.1.p sequence-type=predicted peptide transcript=Glyma.06g007400.1 locus=Glyma.06g007400 ID=Glyma.06g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*






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