SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38690.1 | AT | PLC-like phosphodiesterases superfamily protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008081 | GO-mf | phosphoric diester hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG4306 | KOG | Glycosylphosphatidylinositol-specific phospholipase C | JGI | N/A | IEA |
| PTHR13593 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PF00388 | PFAM | Phosphatidylinositol-specific phospholipase C, X domain | JGI | N/A | IEA |
| LIPASYN-PWY | SoyCyc9 | phospholipases | Plant Metabolic Network | ISS | |
| PWY-6351 | SoyCyc9 | D-myo-inositol (1,4,5)-trisphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6367 | SoyCyc9 | D-myo-inositol-5-phosphate metabolism | Plant Metabolic Network | ISS | |
| PWY-7039 | SoyCyc9 | phosphatidate metabolism, as a signaling molecule | Plant Metabolic Network | ISS | |
| GN7V-66108 | SoyCyc9-rxn | phosphatidylinositol diacylglycerol-lyase | Plant Metabolic Network | ISS |
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Glyma.06g004800 not represented in the dataset |
Glyma.06g004800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma06g00710 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g004800.1 sequence-type=CDS polypeptide=Glyma.06g004800.1.p locus=Glyma.06g004800 ID=Glyma.06g004800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGGTCAGAGGTGTCTAAACAGATGGAGCGAAGAAAGACAATCCAGACAGAGAAGAAGAGTCTGTCCGATCTGAAAAGCAGCGGAGAAGACTACCCTGGCTCCGACTACCGTCCCCAAGACAGAAAAAACTGGATGTCCCATCTCGACCCTCAGAAACTCCGCATCAACCAAATCGTCTGGCCCGGCACCCACGACTCCGCAACCAACAAAATTGGCATCCCTCTCCTCACTCGCCCCTTCGCCCAGTGCCAATCCCTCTCCATCTACCGCCAGCTCTCCCTCGGCACCCGCGTCCTCGACATCCGCGTCCAAGAACACCGCCGCGTCTGCCACGGTATCCTCCTCACCTACGGCGTTGACCTCGTCCTCAACGACGTCAAGAAGTTCCTTTCCGACACGCAGTCCGAAATCCTAATCCTGGAGATTAGAACCGAGTTCGGCCACGAGGACCCTCCCGAATTCGACAAGTACCTGGAGGAACAGCTGGGGGAGCATCTGATCCATCAGGACGACGCCGTTTTCGGGAAGACCGTGGCGGAGTTGTTGCCAAAGAGAGTTATCTGCGTTTGGAAGCCCAGAAAATCGTCCCAGCCCAAACCTGGGAGTCCTCTCTGGAGTGCGGGCTTTCTGAAGGATAATTGGATCAACACGGATCTGCCTTCCACCAAGTTCGACGGCAATTTGAATCACTTGAGCGAGCACCCTCCCGTTACGTCGCGCAAATACTTCTACAGGATCGAGAACACCGTTACCCCCGTCGCGGATAACCCCGTTCTCTGTGTTAAACCTGTTACCCGACGCATTCATGGCTACGCCAGGCTCTTCATCGCTCAATGCTTCGCCAAAGGATTCGCTGATAGGCTTCAGGTCTTCTCCACGGATTTCATTGACGAGGATTTCGTTGACGCATGCGCTGGACTCACTCATGCAAGGGTCGAAGGGAAAGCCTGA
>Glyma.06g004800.1.p sequence-type=predicted peptide transcript=Glyma.06g004800.1 locus=Glyma.06g004800 ID=Glyma.06g004800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGSEVSKQMERRKTIQTEKKSLSDLKSSGEDYPGSDYRPQDRKNWMSHLDPQKLRINQIVWPGTHDSATNKIGIPLLTRPFAQCQSLSIYRQLSLGTRVLDIRVQEHRRVCHGILLTYGVDLVLNDVKKFLSDTQSEILILEIRTEFGHEDPPEFDKYLEEQLGEHLIHQDDAVFGKTVAELLPKRVICVWKPRKSSQPKPGSPLWSAGFLKDNWINTDLPSTKFDGNLNHLSEHPPVTSRKYFYRIENTVTPVADNPVLCVKPVTRRIHGYARLFIAQCFAKGFADRLQVFSTDFIDEDFVDACAGLTHARVEGKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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