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Report for Sequence Feature Glyma.06g003800

Feature Type:gene_model
Chromosome:Gm06
Start:347098
stop:348294
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g003800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38620.1AT myb domain protein 4 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0030154GO-bp cell differentiation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001135GO-mf transcription factor activity, RNA polymerase II transcription factor recruiting EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0044212GO-mf transcription regulatory region DNA binding EnsemblGenomesN/AIEA
KOG0048 KOG Transcription factor, Myb superfamily JGI N/AIEA
PTHR10641Panther MYB-LIKE DNA-BINDING PROTEIN MYB JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA

Proteins Associated with Glyma.06g003800
LocusGene SymbolProtein Name
MYB48 MYB transcription factor MYB48

Expression Patterns of Glyma.06g003800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g003800
ParalogEvidenceComments
Glyma.04g004100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g003800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g00630 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.06g003800
>Glyma.06g003800.2 sequence-type=transcript locus=Glyma.06g003800 ID=Glyma.06g003800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCGGAAGAGAATTGAATAAAGATTGAGTATGAGAAAAGGGGCTATAAGAATGAGGGGGTCGGGGGAGGGCATATTGTTGGAGAGCATAGGATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCACAGCCTCCTTGGCAACAAATTGCCCGGTAGAACTGACAATGAGATCAAGAATTACTGGAATACTCACATACGCAGGAAGCTTCTGAGCAGAGGTATTGACCCTGCCACTCACAGGCCTCTCAACGATTCTTCTCATCAAGAACCTGCTGCTGTCTCTGCCCCTCCTAAACATCAAGAGTCCTTTCACCATGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCATCATCCTCAACCTGATCATCCGCACTTGAAGACCCTTGTGACAAACTCAAACCTTTGCTTTCCCTGCAGTCTGGGTTTGCATAATAGCAAAGATTGTAGCTGTGCCCTCCACACTAGTACTGCCAACGCTACTGCTACTGGCTATGATTTCTTGGCCTTGAAAACCACCGTCGTTTTGGATTACAGAACCTTGCACATGAAATGAAATCATATTACTGAAATCtctctctttctttctttctttcttttcttctCTAATATAATTTcttacttacttacttacttacttacttacttGTTAATGGTTGCAAATGATAAAAAAGTTCCAGCCAGTACAGTTGAACATTTCCATTTTCCTCCTCCCTTTTATTCCTATGTTCATGTCCATATTTGGTACTTCTTCTTCCCTCCCTTCCGCTTATTTTCTTAATTCGTAATTGTGGATAAAGCCTAATGTTCATTCACCGTTTCTCCTCCAGCAAATAAAAAATAAAAAGCTGCCTCATGCGTAAGACTGCAAACTTTTCTTGTT
Coding sequences of Glyma.06g003800
>Glyma.06g003800.1 sequence-type=CDS polypeptide=Glyma.06g003800.1.p locus=Glyma.06g003800 ID=Glyma.06g003800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCACAGCCTCCTTGGCAACAAGTGGTCTCTAATTGCTGGTAGATTGCCCGGTAGAACTGACAATGAGATCAAGAATTACTGGAATACTCACATACGCAGGAAGCTTCTGAGCAGAGGTATTGACCCTGCCACTCACAGGCCTCTCAACGATTCTTCTCATCAAGAACCTGCTGCTGTCTCTGCCCCTCCTAAACATCAAGAGTCCTTTCACCATGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCATCATCCTCAACCTGATCATCCGCACTTGAAGACCCTTGTGACAAACTCAAACCTTTGCTTTCCCTGCAGTCTGGGTTTGCATAATAGCAAAGATTGTAGCTGTGCCCTCCACACTAGTACTGCCAACGCTACTGCTACTGGCTATGATTTCTTGGCCTTGAAAACCACCGTCGTTTTGGATTACAGAACCTTGCACATGAAATGA

>Glyma.06g003800.2 sequence-type=CDS polypeptide=Glyma.06g003800.2.p locus=Glyma.06g003800 ID=Glyma.06g003800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCCCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATCATCGCCTCATTTCTTACATTAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGTTGCGGCAAGAGCTGTCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAGCGCGGCAATTTCTCCCTCGAAGAAGACCAACTCATCATCAAACTCCACAGCCTCCTTGGCAACAAATTGCCCGGTAGAACTGACAATGAGATCAAGAATTACTGGAATACTCACATACGCAGGAAGCTTCTGAGCAGAGGTATTGACCCTGCCACTCACAGGCCTCTCAACGATTCTTCTCATCAAGAACCTGCTGCTGTCTCTGCCCCTCCTAAACATCAAGAGTCCTTTCACCATGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCATCATCCTCAACCTGATCATCCGCACTTGAAGACCCTTGTGACAAACTCAAACCTTTGCTTTCCCTGCAGTCTGGGTTTGCATAATAGCAAAGATTGTAGCTGTGCCCTCCACACTAGTACTGCCAACGCTACTGCTACTGGCTATGATTTCTTGGCCTTGAAAACCACCGTCGTTTTGGATTACAGAACCTTGCACATGAAATGA
Predicted protein sequences of Glyma.06g003800
>Glyma.06g003800.1.p sequence-type=predicted peptide transcript=Glyma.06g003800.1 locus=Glyma.06g003800 ID=Glyma.06g003800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSPCCEKAHTNKGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSLEEDQLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSHQEPAAVSAPPKHQESFHHERCPDLNLELTISPPHHPQPDHPHLKTLVTNSNLCFPCSLGLHNSKDCSCALHTSTANATATGYDFLALKTTVVLDYRTLHMK*

>Glyma.06g003800.2.p sequence-type=predicted peptide transcript=Glyma.06g003800.2 locus=Glyma.06g003800 ID=Glyma.06g003800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSPCCEKAHTNKGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSLEEDQLIIKLHSLLGNKLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSHQEPAAVSAPPKHQESFHHERCPDLNLELTISPPHHPQPDHPHLKTLVTNSNLCFPCSLGLHNSKDCSCALHTSTANATATGYDFLALKTTVVLDYRTLHMK*






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