Glyma.06g002900

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Report for Sequence Feature Glyma.06g002900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	233065
stop:	235274
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g002900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48730.1	AT	glutamate-1-semialdehyde 2,1-aminomutase 2	JGI	N/A	IEA
GO:0006779	GO-bp	porphyrin-containing compound biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006782	GO-bp	protoporphyrinogen IX biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0015995	GO-bp	chlorophyll biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0033014	GO-bp	tetrapyrrole biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008483	GO-mf	transaminase activity	EnsemblGenomes	N/A	IEA
GO:0008483	GO-mf	transaminase activity	JGI	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
GO:0030170	GO-mf	pyridoxal phosphate binding	EnsemblGenomes	N/A	IEA
GO:0030170	GO-mf	pyridoxal phosphate binding	JGI	N/A	IEA
GO:0042286	GO-mf	glutamate-1-semialdehyde 2,1-aminomutase activity	EnsemblGenomes	N/A	IEA
KOG1401	KOG	Acetylornithine aminotransferase	JGI	N/A	IEA
PTHR11986	Panther	AMINOTRANSFERASE CLASS III	JGI	N/A	IEA
PTHR11986:SF5	Panther	GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE	JGI	N/A	IEA
PF00202	PFAM	Aminotransferase class-III	JGI	N/A	IEA
PWY-5188	SoyCyc9	tetrapyrrole biosynthesis I (from glutamate)	Plant Metabolic Network		ISS
PWY-5918	SoyCyc9	superpathay of heme b biosynthesis from glutamate	Plant Metabolic Network		ISS
GN7V-44257	SoyCyc9-rxn	glutamate-1-semialdehyde 2,1-aminomutase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.06g002900

Locus	Gene Symbol	Protein Name
	GSA1	glutamate 1-semialdehyde aminotransferase gene 1

Expression Patterns of Glyma.06g002900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g002900

Paralog	Evidence	Comments
Glyma.04g002900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g002900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g00510	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.06g002900

Limit To All Plant Sequences

>Glyma.06g002900.1 sequence-type=CDS polypeptide=Glyma.06g002900.1.p locus=Glyma.06g002900 ID=Glyma.06g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTTTCGGCTATCACTGGAGCGAGGCTAACTCTAGGGATGTCTCTTTCCTCTTCCACGCGATCACGAACCGTCGCAATGGCCGTATCTATCGACCCCAAGACCGATAACAAACTCACTCTTACCAAGTCCGAGGAAGCTTTCGCTGCGGCCAAGGAGCTGATGCCTGGAGGCGTGAACTCCCCAGTTCGTGCCTTCAAATCCGTGGGTGGTCAACCAATTGTGATTGATTCAGTCAAAGGGTCTCGTATGTGGGATATCGATGGCAATGAGTACATTGACTACGTTGGTTCCTGGGGTCCTGCAATCATTGGTCACGCTGATGATCAGGTGCTTGCAGCTCTGGGTGAAACCATGAAGAAAGGAACCAGCTTTGGTGCACCCTGTCTGCTGGAAAACACTTTGGCAGAGCTGGTTATCGATGCCGTCCCCAGCATTGAAATGGTTCGGTTTGTCAATTCAGGCACTGAAGCTTGCATGGGTGCGCTCCGTCTGGCCCGTGCTTATACCGGAAGAGAGAAGATCATCAAGTTTGAGGGCTGTTACCATGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCTTAGGACTTCCTGATTCTCCCGGTGTCCCCAAAGCTGCCACTTTTGAAACCCTTACAGCCCCCTACAATGACACCGAGGCCATTGAGAAACTCTTCGAGGCCAACAAAGGAGAAATTGCCGCAGTTTTCCTCGAACCTGTTGTTGGAAACGCTGGTTTCATTGTTCCTAAGCCTGATTTTCATAGTTTCTTGCGCAAGATCACCAAGGAGAACAATACCCTTCTTGTGTTTGATGAAGTCATGACTGGATTTCGTTTGTCATATGGAGGTGCTCAAGAGTATTTTGGCATAACTCCAGATATAACAACTCTAGGAAAGATCATTGGTGGAGGTCTGCCGGTAGGCGCTTATGGAGGGAGGAGGGATATTATGGAGAAGGTGGCACCAGCTGGCCCAATGTATCAGGCTGGGACCTTGAGTGGGAACCCTTTGGCCATGACTGCAGGCATAGAGACCCTGCAGCGTATTAAGGAGCCAGGAACTTACGAGTACTTGGACAAAATCACTGGTGAGCTTGTTGAGGGCATCATCGAAGCTGGGAAGCGGGCAGGCCATGCAATATGTGGTGGGCATATAAGGGGGATGTTTGGGTTTTTCTTCACAGAAGGACCAGTGTATAATTTTGCAGATGCCAAAAAGAGTGATACGGCCAAGTTTGCTAGGTTCTTTTGGGGAATGCTGGCGGAAGGTGTCTATTTGGCACCTTCCCAGTTTGAGGCTGGCTTCACCAGCTTGGCACATACTTCTGATGACATAAAAAAGACGATAGCCGCTGCTGAGAAGGTTTTCAGGGAGATCTGA

Predicted protein sequences of Glyma.06g002900

Limit To All Plant Sequences

>Glyma.06g002900.1.p sequence-type=predicted peptide transcript=Glyma.06g002900.1 locus=Glyma.06g002900 ID=Glyma.06g002900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSAITGARLTLGMSLSSSTRSRTVAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAYTGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTEAIEKLFEANKGEIAAVFLEPVVGNAGFIVPKPDFHSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIETLQRIKEPGTYEYLDKITGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSDTAKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI*

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