SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g001800

Feature Type:gene_model
Chromosome:Gm06
Start:170261
stop:171563
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.06g001800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43030.1AT JGI N/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular anatomical structure JGI N/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
K02906KEGG Ribosome JGI N/AIEA
KOG3141 KOG Mitochondrial/chloroplast ribosomal protein L3 JGI N/AIEA
PTHR11229PantherFam 50S RIBOSOMAL PROTEIN L3 JGI N/AIEA
PF00297Pfam Ribosomal protein L3 JGI N/AIEA

Gene model name correspondences to Glyma.06g001800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma06g00420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06g001800
>Glyma.06g001800.1 sequence-type=CDS polypeptide=Glyma.06g001800.1.p locus=Glyma.06g001800 id=Glyma.06g001800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGATCTTGTCCGTTCCGTCACCAACACAGCGTTGTTCCATTTCGATTTCTCGGCTGCCATTGCCATTGCCATTGCCGTTTCAATTGCAAGTAAGAAGAAGAGCAAAAGGGGGAAAAGTGGTAATGAGCATGGAGGCAGGTATTGGAGTGATGGGCACCAAGTTGGGTATGATGAGCTATTTCGAATCCGACGGAGAGGTTGTTCCTGTCACTGTCGTGGGTTTCAAAGAAGGCAACATCGTCACCCAGATCAAAACTGAGGCCACCGATGGATACGACGCCGTCCAGGTTGGTTACCGAAGGGTCAGAGACCGCAAATTGACCAAACCCGAAATGGGTCATCTCCATAAGGTCGGCGCCATTCCCATGCGCCATCTTCAGGAGTTCCGTCTTCAAGCCATCGATGGCTTCGACCTTAATCAGCGCCTTCTTTTTGATGAAACTTTCAAGGAGGGTGATCTTGTTGATGTCTCTGGCACCACCATTGGCAAGGGTTTCCAAGGTGGAATCAAGCGTCATAACTTCAAAAGGGGTCCAATGACACATGGTTCCAAGAGTCACCGACAACTAGGATCAATTGGTGCTGGAACCACGCCTGGTCGTGTTTACAAGGGGAAGAAGATGCCTGGTAGGATGGGAGGAACCAAGAGGAAGATCAGAAAGCTTAAGATTGTCAAAATTGATAAAGATCTTAATGTCCTCATGATCAAAGGTGCTCTCCCTGGTAAGCCAGGCAATCTTCTAAGGATAACTCCTGCCAAGATTGTCGGCAAGAACATTCCAAAGAATTAG

>Glyma.06g001800.2 sequence-type=CDS polypeptide=Glyma.06g001800.2.p locus=Glyma.06g001800 id=Glyma.06g001800.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGATCTTGTCCGTTCCGTCACCAACACAGCGTTGTTCCATTTCGATTTCTCGGCTGCCATTGCCATTGCCATTGCCGTTTCAATTGCAAGTAAGAAGAAGAGCAAAAGGGGGAAAAGTGGTAATGAGCATGGAGGCAGGTATTGGAGTGATGGGCACCAAGTTGGGTATGATGAGCTATTTCGAATCCGACGGAGAGGTTGTTCCTGTCACTGTCGTGGGTTTCAAAGAAGGCAACATCGTCACCCAGATCAAAACTGAGGCCACCGATGGATACGACGCCGTCCAGGTTGGTTACCGAAGGGTCAGAGACCGCAAATTGACCAAACCCGAAATGGGTCATCTCCATAAGGTCGGCGCCATTCCCATGCGCCATCTTCAGGAGTTCCGTCTTCAAGCCATCGATGGCTTCGACCTTAATCAGCGCCTTCTTTTTGATGAAACTTTCAAGGAGGGTGATCTTGTTGATGTCTCTGGCACCACCATTGGCAAGGGTTTCCAAGGTCGTCTCTTTTTCATTTTTACTTTCTTATCTATTTGTGCTCCTTCAACAATGGGGGTGACTGTGGCTTAA
Predicted protein sequences of Glyma.06g001800
>Glyma.06g001800.1.p sequence-type=predicted peptide transcript=Glyma.06g001800.1 locus=Glyma.06g001800 id=Glyma.06g001800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSILSVPSPTQRCSISISRLPLPLPLPFQLQVRRRAKGGKVVMSMEAGIGVMGTKLGMMSYFESDGEVVPVTVVGFKEGNIVTQIKTEATDGYDAVQVGYRRVRDRKLTKPEMGHLHKVGAIPMRHLQEFRLQAIDGFDLNQRLLFDETFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDKDLNVLMIKGALPGKPGNLLRITPAKIVGKNIPKN*

>Glyma.06g001800.2.p sequence-type=predicted peptide transcript=Glyma.06g001800.2 locus=Glyma.06g001800 id=Glyma.06g001800.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSILSVPSPTQRCSISISRLPLPLPLPFQLQVRRRAKGGKVVMSMEAGIGVMGTKLGMMSYFESDGEVVPVTVVGFKEGNIVTQIKTEATDGYDAVQVGYRRVRDRKLTKPEMGHLHKVGAIPMRHLQEFRLQAIDGFDLNQRLLFDETFKEGDLVDVSGTTIGKGFQGRLFFIFTFLSICAPSTMGVTVA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo