SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.06g001600

Feature Type:gene_model
Chromosome:Gm06
Start:153557
stop:158641
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.06g001600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08540.1AT ABC1,ATSIG1,ATSIG2,SIG1,SIG2,SIGA,SIGB JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA-binding transcription factor activity JGI N/AIEA
GO:0016987GO-mf sigma factor activity JGI N/AIEA
PTHR30603PantherFam RNA POLYMERASE SIGMA FACTOR RPO JGI N/AIEA
PF04539Pfam Sigma-70 region 3 JGI N/AIEA
PF04542Pfam Sigma-70 region 2 JGI N/AIEA
PF04545Pfam Sigma-70, region 4 JGI N/AIEA

Gene model name correspondences to Glyma.06g001600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.06g001600
>Glyma.06g001600.1 sequence-type=CDS polypeptide=Glyma.06g001600.1.p locus=Glyma.06g001600 id=Glyma.06g001600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGACACTTTCAGGACTCATCCCTATGCTCTTCCTACCCATCCATCAAAAACAAGACTAAATTTGTGTTTCCAGCCGCAATGTGTGTTGTCTGCCACATCTCCTTCAACGCTGCTTAGTTTGGAAAAGAAGTTGGCATTAGATGCTCCTTCTGATCCAAACACGTCTTGGCCCTATATCGCTGCTGTTGCCCCTCCCTCACCACACTTAAAGGCCAACTTTAAATCAACCTTATCTGCGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCATCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGTTTTACTAGTAAAAAAGAAGCCTCCAGCAGAAGCAGAGTATAAATCCCATGTTTCTTCCAAATCTGATGATTTACTTCTCAAATGGTTTCATCAAATGGAAGCGGAAGATGGTGTAGCAGAAGAGTCCATGGGTGCTGGAGCAGAAATAATGGAAGGTGTTGACATAAGCCCCAGCGAAGAGGAATCTGATCTAGAGCCTTCCCATGAGGAACTTGAGTGTCTGCAGGAACGGCTTTCAGACAATATAGCTGTAAGATCTAGGCGCCTAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTACCACGAATTTTGCATCTTTAAAACCTGGCTCCTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACGACTAGCGCTTCTAGGCTTCTTACTCCAACTGAAGAAATTAAGTTGTCAGCAGGAATACAGGACCTTCTAAAGCTTGAAAAAATCCAGGAGGATCTTGCAGAAAGATTTGGTGATCAACCCACGTTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCGATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAACTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCAGAAGTAATTTCTGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTAGAAGAGGCTCTGGACAGTCTCAATGCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA
Predicted protein sequences of Glyma.06g001600
>Glyma.06g001600.1.p sequence-type=predicted peptide transcript=Glyma.06g001600.1 locus=Glyma.06g001600 id=Glyma.06g001600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSCLLPHFNCHLDTFRTHPYALPTHPSKTRLNLCFQPQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAAVAPPSPHLKANFKSTLSAESLLTNEEAVIAAAASEALALAKAAVKVAKDAVLLVKKKPPAEAEYKSHVSSKSDDLLLKWFHQMEAEDGVAEESMGAGAEIMEGVDISPSEEESDLEPSHEELECLQERLSDNIAVRSRRLTERKAKRVRAAEKATTNFASLKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNARERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo