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Report for Sequence Feature Glyma.06g001600

Feature Type:gene_model
Chromosome:Gm06
Start:154527
stop:159057
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06g001600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08540.1AT RNApolymerase sigma subunit 2 JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation EnsemblGenomesN/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0006399GO-bp tRNA metabolic process EnsemblGenomesN/AIEA
GO:0009658GO-bp chloroplast organization EnsemblGenomesN/AIEA
GO:0010114GO-bp response to red light EnsemblGenomesN/AIEA
GO:0071482GO-bp cellular response to light stimulus EnsemblGenomesN/AIEA
GO:2000142GO-bp regulation of DNA-templated transcription, initiation EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0016987GO-mf sigma factor activity EnsemblGenomesN/AIEA
GO:0016987GO-mf sigma factor activity JGI N/AIEA
PF04539PFAM Sigma-70 region 3 JGI N/AIEA
PF04542PFAM Sigma-70 region 2 JGI N/AIEA
PF04545PFAM Sigma-70, region 4 JGI N/AIEA

Expression Patterns of Glyma.06g001600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g001600 not represented in the dataset
Glyma.06g001600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06g001600
ParalogEvidenceComments
Glyma.04g002000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g001600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.06g001600
>Glyma.06g001600.1 sequence-type=CDS polypeptide=Glyma.06g001600.1.p locus=Glyma.06g001600 ID=Glyma.06g001600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGACACTTTCAGGACTCATCCCTATGCTCTTCCTACCCATCCATCAAAAACAAGACTAAATTTGTGTTTCCAGCCGCAATGTGTGTTGTCTGCCACATCTCCTTCAACGCTGCTTAGTTTGGAAAAGAAGTTGGCATTAGATGCTCCTTCTGATCCAAACACGTCTTGGCCCTATATCGCTGCTGTTGCCCCTCCCTCACCACACTTAAAGGCCAACTTTAAATCAACCTTATCTGCGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCATCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGTTTTACTAGTAAAAAAGAAGCCTCCAGCAGAAGCAGAGTATAAATCCCATGTTTCTTCCAAATCTGATGATTTACTTCTCAAATGGTTTCATCAAATGGAAGCGGAAGATGGAACGGCTTCAGACAATATAGCTGTAAGATCTAGGCGCCTAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTACCACGAATTTTGCATCTTTAAAACCTGGCTCCTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACGACTAGCGCTTCTAGGCTTCTTACTCCAACTGAAGAAATTAAGTTGTCAGCAGGAATACAGGACCTTCTAAAGCTTGAAAAAATCCAGGAGGATCTTGCAGAAAGATTTGGTGATCAACCCACGTTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCGATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAACTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCAGAAGTAATTTCTGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTAGAAGAGGCTCTGGACAGTCTCAATGCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA
Predicted protein sequences of Glyma.06g001600
>Glyma.06g001600.1.p sequence-type=predicted peptide transcript=Glyma.06g001600.1 locus=Glyma.06g001600 ID=Glyma.06g001600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCLLPHFNCHLDTFRTHPYALPTHPSKTRLNLCFQPQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAAVAPPSPHLKANFKSTLSAESLLTNEEAVIAAAASEALALAKAAVKVAKDAVLLVKKKPPAEAEYKSHVSSKSDDLLLKWFHQMEAEDGTASDNIAVRSRRLTERKAKRVRAAEKATTNFASLKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNARERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS*






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