Glyma.06g000700

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Report for Sequence Feature Glyma.06g000700

Feature Type:	gene_model
Chromosome:	Gm06
Start:	97823
stop:	101462
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.06g000700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04740.1	AT	calcium-dependent protein kinase 23	JGI	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	JGI	N/A	IEA
KOG0037	KOG	Ca2+-binding protein, EF-Hand protein superfamily	JGI	N/A	IEA
PTHR10183	Panther	CALPAIN	JGI	N/A	IEA
PTHR10183:SF144	Panther		JGI	N/A	IEA
PF00036	PFAM	EF hand	JGI	N/A	IEA

Expression Patterns of Glyma.06g000700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.06g000700 not represented in the dataset	Glyma.06g000700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.06g000700

Paralog	Evidence	Comments
Glyma.04g001200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06g000700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma06g00290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.06g000700

Limit To All Plant Sequences

>Glyma.06g000700.2 sequence-type=transcript locus=Glyma.06g000700 ID=Glyma.06g000700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATCTGTCAGTCGTgaacaagaagaagaagaagcaagcagcaattcaagaaaggaaaccctttttttCCTTTCCTTTTCGCATCGCAAATCGCAATTCGCAATCTCCGACCTACCTCTCTCTCTTCATAAATTTAGTTCAATAATTTAATAACAAATACAATCAAATTCATGCACGTCTCTTCTCCACTGGGGTTGGGCAAGGTGAGGCGAAACGAAAGAGAAAGAGAATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGATTCAACTATATGACGGCTTGAGAAGATGATTCACAAATAATGCACTTTGTAAAATACCATAAAGTCATCTTAGAGCAAGTTAAGTTGTGATGGTGTTATATAAAATGAAAACATCTTGGGTTTGGATACTATTTGCCATCTGTCTGCAAAATACCGTGGTTTCTTTTTCTCCTTCCGATGATGTAATCTTATTTATAAAACATCTTGGGTTATGATAACTTGTGAAGATGATTCGTAGAGTTTTAGAGCCAGTTATGTGTTGGAGATAAAATATGATGTATATCCTGATTCTCATTTCTCTGCAAATTTTATACGAAGTGTTTTTATGCCCGAAGTTGGATATAATCATGTACTGTAACTCAGCTAGTTTTGGGAGCAACAAGATGTAAATATACAAGAATCTAGGATCAATTAAGTACTTTAGGACTTTTACATTGTTTC

>Glyma.06g000700.3 sequence-type=transcript locus=Glyma.06g000700 ID=Glyma.06g000700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
tttattttttaataattaaAAAAAAAACAAAAAGAATTATTACAGTATTTTTTTTTAGTTAACATAAAAACGGCGCCGTTTTGATTTGGATGTATTGAAGGGGGTTGGGCAAGGTGAGGCGAAACGAAAGAGAAAGAGAATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGGTACTATGAGCTTTCAAGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGATTCAACTATATGACGGCTTGAGAAGATGATTCACAAATAATGCACTTTGTAAAATACCATAAAGTCATCTTAGAGCAAGTTAAGTTGTGATGGTGTTATATAAAATGAAAACATCTTGGGTTTGGATACTATTTGCCATCTGTCTGCAAAATACCGTGGTTTCTTTTTCTCCTTCCGATGATGTAATCTTATTTATAAAACATCTTGGGTTATGATAACTTGTGAAGATGATTCGTAGAGTTTTAGAGCCAGTTATGTGTTGGAGATAAAATATGATGTATATCCTGATTCTCATTTCTCTGCAAATTTTATACGAAGTGTTTTTATGCCCGAAGTTGGATATAATCATGTACTGTAACTCAGCTAGTTTTGGGAGCAACAAGATGTAAATATACAAGAATCTAGGATCAATTAAGT

Coding sequences of Glyma.06g000700

Limit To All Plant Sequences

>Glyma.06g000700.1 sequence-type=CDS polypeptide=Glyma.06g000700.1.p locus=Glyma.06g000700 ID=Glyma.06g000700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGGTACTATGAGCTTTCAAGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

>Glyma.06g000700.2 sequence-type=CDS polypeptide=Glyma.06g000700.2.p locus=Glyma.06g000700 ID=Glyma.06g000700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

>Glyma.06g000700.3 sequence-type=CDS polypeptide=Glyma.06g000700.3.p locus=Glyma.06g000700 ID=Glyma.06g000700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGAGGGTAGCAATATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACAGCGGTGCAGCTAAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCGCTCTCAGTGGTTCAGCAAATGATCAGGATGTACGATTTCGACCGGAATGGTACTATGAGCTTTCAAGAATTTGTTTCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTGAAAATGGGAGGTTTCAGCTGGACAACTTAATATCAATCTGTATATTCTTACAATCAGCACGGAACCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA

Predicted protein sequences of Glyma.06g000700

Limit To All Plant Sequences

>Glyma.06g000700.1.p sequence-type=predicted peptide transcript=Glyma.06g000700.1 locus=Glyma.06g000700 ID=Glyma.06g000700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKRVAILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVSLNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSENGRFQLDNLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

>Glyma.06g000700.2.p sequence-type=predicted peptide transcript=Glyma.06g000700.2 locus=Glyma.06g000700 ID=Glyma.06g000700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKRVAILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNEFVSLNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSENGRFQLDNLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

>Glyma.06g000700.3.p sequence-type=predicted peptide transcript=Glyma.06g000700.3 locus=Glyma.06g000700 ID=Glyma.06g000700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKRVAILQEWFDRVDSEKSGSITAVQLKTALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFQEFVSLNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSENGRFQLDNLISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI*

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