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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55300.1 | AT | TBP-associated factor 7 | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0006367 | GO-bp | transcription initiation from RNA polymerase II promoter | EnsemblGenomes | N/A | IEA |
| GO:0006367 | GO-bp | transcription initiation from RNA polymerase II promoter | JGI | N/A | IEA |
| GO:0051123 | GO-bp | RNA polymerase II transcriptional preinitiation complex assembly | EnsemblGenomes | N/A | IEA |
| GO:1903508 | GO-bp | positive regulation of nucleic acid-templated transcription | EnsemblGenomes | N/A | IEA |
| GO:0005669 | GO-cc | transcription factor TFIID complex | EnsemblGenomes | N/A | IEA |
| GO:0005669 | GO-cc | transcription factor TFIID complex | JGI | N/A | IEA |
| GO:0003713 | GO-mf | transcription coactivator activity | EnsemblGenomes | N/A | IEA |
| GO:0008134 | GO-mf | transcription factor binding | EnsemblGenomes | N/A | IEA |
| GO:0035035 | GO-mf | histone acetyltransferase binding | EnsemblGenomes | N/A | IEA |
| GO:0044212 | GO-mf | transcription regulatory region DNA binding | EnsemblGenomes | N/A | IEA |
| KOG4011 | KOG | Transcription initiation factor TFIID, subunit TAF7 | JGI | N/A | IEA |
| PTHR12228 | Panther | TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED | JGI | N/A | IEA |
| PF04658 | PFAM | TAFII55 protein conserved region | JGI | N/A | IEA |
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Glyma.06G309800 not represented in the dataset |
Glyma.06G309800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g309800 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma06g46642 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g309800.1 sequence-type=CDS polypeptide=Glyma.06g309800.1.p locus=Glyma.06g309800 ID=Glyma.06g309800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTGCCATAGCCATGGCGGCCATGGCGGATGTGGCGGGGAGGCGGAAAATGGCGGAATTTTTTTTTTTGTCCGCGGTAGGAGTTGGGCTGACCCGACCCAACCCTACCCGGAAACTTAATGAAAACCATGACCCCCCCCCCCCTACCTTTCAGAACGCTGCTGCAACCCTCGAAGCTTCAACACAGCGCGACCTCGGAACCAGCCACGACCCCTGCAACCAGCCTCGGAACCAGCCGCGCGTGACCCGCTGCACACAGCAGCCAGCAGCGACGACCCATGGCGTGAACGGCGGCGACGAGCACGGCGTGAACGACGGCGACGCGAACGGAGAAGACGACCCAGAACCGCGACCTCGACTTATACTGGAGCAATTCATACTTAGAGTTCCACCTAATGTGGCAGAGCGGATAGAGCGTCTTCTGAATGAAAACAATGCTTCTTCATCTGAAGACAAGTCACTAGATTTGTCATTTAGAGAGGATGGAAGAAGTGGTACGTTTATGATTGGGAATGAACAATTCCCAGCTTCTCTATTGGATCTTCCTTGCGTTGTTGAATCCTATAAGACTTATGATGATAACTCTTTGATTAAGACTGCCGATATTGGTCAGATGATTATGGTGAGGGAATCTGGTGATGCTGCTCCAGATGTAATTGAGTACAGACATGGCCTCACTCCACCCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATCCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTGGAGGAACAGCGGACAATCTTGATATCCTTACATCTTTTTGCCCACCTGATAGTGGAAACAAGCTTAACTTTGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTAATAAAAAATCTGCACCTAAGCCTGCACCAAAACATGATATTCCAGAGAATCTTACTAATGCAGGAGAAGCTGACAGGAGTGATTCTGAGGAATCTGATGACTCAGTCTGA
>Glyma.06g309800.1.p sequence-type=predicted peptide transcript=Glyma.06g309800.1 locus=Glyma.06g309800 ID=Glyma.06g309800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAAAIAMAAMADVAGRRKMAEFFFLSAVGVGLTRPNPTRKLNENHDPPPPTFQNAAATLEASTQRDLGTSHDPCNQPRNQPRVTRCTQQPAATTHGVNGGDEHGVNDGDANGEDDPEPRPRLILEQFILRVPPNVAERIERLLNENNASSSEDKSLDLSFREDGRSGTFMIGNEQFPASLLDLPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRREPDLNPELVSRVEKDLLKIMAGGTADNLDILTSFCPPDSGNKLNFAEQEEGDENARGANKKSAPKPAPKHDIPENLTNAGEADRSDSEESDDSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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