SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18790.1 | AT | JGI | N/A | IEA | |
| GO:0000350 | GO-bp | generation of catalytic spliceosome for second transesterification step | EnsemblGenomes | N/A | IEA |
| GO:0000389 | GO-bp | mRNA 3'-splice site recognition | EnsemblGenomes | N/A | IEA |
| GO:0000974 | GO-cc | Prp19 complex | EnsemblGenomes | N/A | IEA |
| GO:0071012 | GO-cc | catalytic step 1 spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0071013 | GO-cc | catalytic step 2 spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0071014 | GO-cc | post-mRNA release spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0071020 | GO-cc | post-spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0000384 | GO-mf | first spliceosomal transesterification activity | EnsemblGenomes | N/A | IEA |
| KOG3068 | KOG | mRNA splicing factor | JGI | N/A | IEA |
| PTHR13021 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PF06246 | PFAM | Isy1-like splicing family | JGI | N/A | IEA |
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Glyma.06G234100 not represented in the dataset |
Glyma.06G234100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g234100 | Wm82.a4.v1 | ISS | As supplied by JGI |
>Glyma.06g234100.1 sequence-type=CDS polypeptide=Glyma.06g234100.1.p locus=Glyma.06g234100 ID=Glyma.06g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCGTAACGAGGAGAAGGCGCAGTCGATGCTCAACCGCTTCATCACGATGAAGGCGGAGGAGAAGAAGAAGCCGAAAGACCGCCGTCCCTTCCTCGCCTCGGAGTGCCGCGATCTCTCAGAGGCGGACAAGTGGCGGCAGCAGATCATGCGGGAGATCGGCCGGAAGGTCGCCGAGATCCAGAATGAGGGTCTCGGTGAGCACCGCCTCAGAGACCTCAACGATGAGATCAACAAACTAATCCGCGAAAAATCGCACTGGGAACGCCGAATCGTCGAGCTCGGCGGTCCCAATTACGCGAAGCACTCCGCGAAGATGACGGACCTAGACGGAAATATCGTCGACGTCCCAAACCCAGGAGGCCGTGGCCCGGGATACCGCTACTTCGGGGCTGCCAAGAAGCTCCCCGGCGTCAAGGAGCTCTTCGAAAAGCCGCCGGATCTTCGCAAACGAAGAACACGCTATGACATTTATAAACGGATTGATGCAAGTTATTATGGTTACCGTGATGAGGAGGATGGTGTACTGGAGCGGCTGGAGGGGCCCGCGGAGGAGGCGATGAGGTGGGAGGCGGCGGAGGAGTGGAGGAGGTTGGATGAGGTGAGGAAGGAGGCGAGGAAGGGGGTGCTGAGCGGGGAGGTGGCGGAGGTGACTGCGGTGGCGAGGGAGGTACTGAAGGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGAGGGCCAGGGAGAGGGAGAAGGAGGACGAGAGGGAGAGGAGGGAGTTCGTGGTGCACGTGCCGCTGCCGGATGAGAAGGAGATTGAGAGGAGGGTGCTGGAGAAGAAGAAGAAGGATCTGTTGAGTAGGTACGCGAGTGAGGGGCTTGTGGAGGAGCAGATTGAGGCTAAGGACATGCTCAACATTCAGCGTTAG
>Glyma.06g234100.1.p sequence-type=predicted peptide transcript=Glyma.06g234100.1 locus=Glyma.06g234100 ID=Glyma.06g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MARNEEKAQSMLNRFITMKAEEKKKPKDRRPFLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYAKHSAKMTDLDGNIVDVPNPGGRGPGYRYFGAAKKLPGVKELFEKPPDLRKRRTRYDIYKRIDASYYGYRDEEDGVLERLEGPAEEAMRWEAAEEWRRLDEVRKEARKGVLSGEVAEVTAVAREVLKEEEEEVVEEERAREREKEDERERREFVVHVPLPDEKEIERRVLEKKKKDLLSRYASEGLVEEQIEAKDMLNIQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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