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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07810.1 | AT | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein | JGI | N/A | IEA |
| GO:0090305 | GO-bp | nucleic acid phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0004519 | GO-mf | endonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0004519 | GO-mf | endonuclease activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR10799 | Panther | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED | JGI | N/A | IEA |
| PTHR10799:SF43 | Panther | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 | JGI | N/A | IEA |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
| PF01844 | PFAM | HNH endonuclease | JGI | N/A | IEA |
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Glyma.06G199800 not represented in the dataset |
Glyma.06G199800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g199800 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma06g21530 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.06g199800.1 sequence-type=CDS polypeptide=Glyma.06g199800.1.p locus=Glyma.06g199800 ID=Glyma.06g199800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGATAAAAAGATCAGATATAGTTGCTGCAAAAACTGTAGTTGGGGTATTCAATATTGATGCCTCTGAAAGGGAAAGTGAAGACGTGCCTTTAGAAACTTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCGAAGCTTTCTGGTTTTCGTGAATGGCTTGCTCTCCATCCAATCATTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGTGTTTTTATGTGAGAAAGGGATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGACAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACGGCACAAGATGTTGTGTTCTTGGAGCTACCAAAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTGAACAGTGATAATTGTGAAGAGCAATCTGCACGCAGAGATGCAGTAGGTGAAACACAATTGGATAAGCAACCTTCTGCAGAAAATTCAAATGAATCCGAAGCAAATCGAGATGATAAATCTGATGAGACTTTTCTTAATAACTCAATTCAGAGTTCTAATATTATGGCTGAAAATATTTCCTGCCAAGATTTAGGCAAGGCTTCAGTACTGGATGGAACTTGTGATGTTGATGTTTTTGATGGCATGGAGAGATGTCCTGAAAAGAGTTTTGAAGATGGAGATCAAGAAATACGGTTGCAGGATTTGAAAAAAATTTCAACAACAGAAGCAGATGACAACCAGTCTGTTAATCTGGTTGAAGTCAATGGACATTGTTCTAATCAAGTTGATTTTCTTCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTCATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAAACAGGCTCATGATGAGAAACAGAAAACAGAGTTTGTAACTGTGAAGGACAACCCCGCATATAGGCATGCTCTTATGGCTTTTGCAGAAGAGTGGAAGAACTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAGGACGCCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTATCTCTGCGAAGTGGCCTTGGTAAAAAGGAAAAAGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGCTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGAGTGTGCACAAATTGCCAATTCGACTGTCATAAGCTCGTTGAGGATATAAGACCTTTGTCATTGGAAAGGCGGCGTGAGTACATAGAGAAAGTAGCACCGAAAGTTGCTAAACGGAAGAAAATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATGACGGAGGAGGTGAGTGCAAGCTGGAGAATCTGAGGACTCTCTGTGTAGCCTGCCATTATGATGTCACTGCTGCACAATGTGCTGAACGACGCATAGCCAAAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTATTAAGGGTGCTACTGGCACTAATACTAAGGACCATAAGCTTCTCGAGGAAGAAGGGAGTATGGTAGAAGATGAGCTTTTAGTTGAGGTTCCTGGCAGTGCCTATTCTTTAGCAGACAGCTAA
>Glyma.06g199800.1.p sequence-type=predicted peptide transcript=Glyma.06g199800.1 locus=Glyma.06g199800 ID=Glyma.06g199800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLQLPPKRRQIIRLLIKRSDIVAAKTVVGVFNIDASERESEDVPLETLDEPDGKLSYQELGIAKLSGFREWLALHPIIAGSENASKMIIFAHHHKVLDGVQVFLCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPKCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLNSDNCEEQSARRDAVGETQLDKQPSAENSNESEANRDDKSDETFLNNSIQSSNIMAENISCQDLGKASVLDGTCDVDVFDGMERCPEKSFEDGDQEIRLQDLKKISTTEADDNQSVNLVEVNGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLHENFRPEELELLSSVADDEKQAHDEKQKTEFVTVKDNPAYRHALMAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRRTPLMEISYPLPSDAVWRKVSLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLANNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQFDCHKLVEDIRPLSLERRREYIEKVAPKVAKRKKMFEKLVNEPTEGNAWHADHIVPVYDGGGECKLENLRTLCVACHYDVTAAQCAERRIAKANARKQLKALMNSMKNGIKGATGTNTKDHKLLEEEGSMVEDELLVEVPGSAYSLADS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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