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Report for Sequence Feature Glyma.06G019800

Feature Type:gene_model
Chromosome:Gm06
Start:1494230
stop:1501925
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.06G019800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76160.1AT SKU5 similar 5 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009505GO-cc plant-type cell wall EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016722GO-mf oxidoreductase activity, oxidizing metal ions EnsemblGenomesN/AIEA
KOG1263 KOG Multicopper oxidases JGI N/AIEA
PTHR11709Panther MULTI-COPPER OXIDASE JGI N/AIEA
PTHR11709:SF11Panther MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED JGI N/AIEA
PF00394PFAM Multicopper oxidase JGI N/AIEA
PF07731PFAM Multicopper oxidase JGI N/AIEA
PF07732PFAM Multicopper oxidase JGI N/AIEA
GN7V-50339SoyCyc9-rxn L-ascorbate oxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.06G019800
LocusGene SymbolProtein Name
Lac14 Laccase 14

Expression Patterns of Glyma.06G019800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.06G019800
ParalogEvidenceComments
Glyma.04g019500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.06G019800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g019800 Wm82.a4.v1ISS As supplied by JGI
Glyma06g02240 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.06G019800
>Glyma.06g019800.1 sequence-type=CDS polypeptide=Glyma.06g019800.1.p locus=Glyma.06g019800 ID=Glyma.06g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGCTCAAGTTGGCGGGAGTAGCCACTGTCGGTTCCCTTCTTCTATGTGTTGCTATTTCTCTCTTTCACATCGCTGGGGCCGAAGATCCCTACCGCTTCTTCAACTGGAATATTACTTATGGTGATATTTACCCTCTTGGTGTTCGCCAAACGGGAATATTGATCAACGGGCAATTCCCAGGTCCAGATATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGTTTAGATGAGCCTTTTCTCCTCTCCTGGAATGGGATCCAGCAGAGAAGGAACTCGTTCGAAGATGGTGTTTTTGGAACAACATGCCCCATTCCAGCAGGGAAGAATTTCACTTACATCCTTCAAGTCAAAGATCAAATTGGGACCTTTTACTACTTCCCATCCCTTGCATTCCACAAAGCCGCTGGCGGTTTTGGAGGCATTAGAATCCTTAGCAGGCCAAGAATTCCAGTCCCATTCCCTGATCCAGCTGGTGATTACACTGTCCTCATTGGAGATTGGTACAAGTCCAACCACACGACTTTGAAAGCCCGTCTTGATAGGGGCAAGAAGCTGCCTTTTCCCGATGGAATCCTTATCAATGGTCGCGGACCTAATGGAGTGTCTTTCAACGTTGAACAAGGAAAGACTTATAGGCTTAGAATATCAAACGTGGGGCTGCAACACTCCCTTAACTTTAGAATCCAGAACCACAAAATGAAGCTGGTAGAAGTGGAAGGAACGCACACCCTTCAGACCATGTACTCCTCTCTTGACGTTCATGTAGGGCAATCTTATTCGGTGCTGGTAACTGCAGACCAACCTGCTCAAGACTATTACATTGTGGTTTCCACACGATTCTCCTACAAGGTCCTCACCACCACTGGAGTGCTTCGCTATAGCAACTCCGCAGGCCCAGTATCAGGCCCACCCCCTGGTGGACCTACAATCCAAATTGATTGGTCTTTGAACCAGGCCCGCTCAATTCGGACAAACCTTACAGCAAGTGGACCGAGGCCAAACCCGCAAGGATCGTACCATTACGGTATGATAAACACGACGAAGACGATCATACTGGCGAGTTCCGCTGGTCAAGTAAATGGGAAACAAAGATACGCAATTAACAGCGTGTCTTATGTTGTCCCAGACACCCCTCTTAAGCTCGCCGATTACTTCAAAATCTCCGGTGTTTTCCGCCCCGGAAGCATATCTGACAGACCCACTGGCGGCGGCATTTACCTTGACACATCTGTGTTACAAGCTGACTACAGAAATTTTGTCGAGATTGTCTTCCAAAACAACGAGAACATCGTTCAGAGCTACCATCTTGATGGCTACTCTTTCTTTGTCGTTGGTATGGATGGGGGACAATGGACAACTGCTAGCAGGAACCAGTACAATCTCCGAGATGCAGTTGCACGTTGCACCACACAGGTATACCCCTTTTCATGGACTGCTATTTATATTGCCCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGGCAACAGTTATATTTGCGCGTTTATACAACATCAACCTCAATCAGAGACGAGTTCCCTGTTCCAAAGAATGCAATTCTTTGTGGTAGGGCAAGTGGGAGACACACGCGACCCCTTTGA
Predicted protein sequences of Glyma.06G019800
>Glyma.06g019800.1.p sequence-type=predicted peptide transcript=Glyma.06g019800.1 locus=Glyma.06g019800 ID=Glyma.06g019800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLKLAGVATVGSLLLCVAISLFHIAGAEDPYRFFNWNITYGDIYPLGVRQTGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPAGKNFTYILQVKDQIGTFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTTLKARLDRGKKLPFPDGILINGRGPNGVSFNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTLQTMYSSLDVHVGQSYSVLVTADQPAQDYYIVVSTRFSYKVLTTTGVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTKTIILASSAGQVNGKQRYAINSVSYVVPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQADYRNFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTTASRNQYNLRDAVARCTTQVYPFSWTAIYIALDNVGMWNLRSEFWARQYLGQQLYLRVYTTSTSIRDEFPVPKNAILCGRASGRHTRPL*






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