SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10170.1 | AT | NF-X-like 1 | JGI | N/A | IEA |
| GO:0000122 | GO-bp | negative regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006366 | GO-bp | transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0000977 | GO-mf | RNA polymerase II regulatory region sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0001078 | GO-mf | transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003700 | GO-mf | DNA binding transcription factor activity | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| PTHR12360 | Panther | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1) | JGI | N/A | IEA |
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Glyma.05g247600 not represented in the dataset |
Glyma.05g247600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g055900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.05g247600.1 sequence-type=CDS polypeptide=Glyma.05g247600.1.p locus=Glyma.05g247600 ID=Glyma.05g247600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGGCAAGTTCCTTCCTTTGTGAAGAGCCATGCCATGCCGGGGATTGTTCTCCTTGTCTGTGTTGCAAGACAAAAATGGAAAATCAGAAATTTACTTTCTAATCCAAATAATATTCTTAATGCGGATTGGGATCCACACTTGTGTCAATTACCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTTACTGATTTGACATGCTCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCGCATCCGGCCTCTCACAGCTGCCTTTTTCGAGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAGTTCTTAGGAACATACCTTGTGGTTCGAAGGATATTAGATGCAATAAACTCTGTGTGAAGACCAGACAGTGCGGTTTACATGCATGTGGCAGAACATGTCACCTCCCACCTTGTGATAATCTATCTGTTGTGACATGTGGTGCTCCTAGGAGAGACTGCCGGCATACATGTATAGCTCCTTGTCACCCTTCAACTCCAAGTCCAGATACAAGATGCGAATTCCCCGTCACAATTACTTGTTCTTGTGGCCGAATAACAGAAAATGTTCCTTGTGATGCTGGTGCTAATTATAATGCTGATGTGGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTTCTTCAACCTGTGGCTGCAAATGGCAAAAAAGCTCCCCTTAGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAAAGGGTTCTTGCAGATGCTTATGAGATTACCGCTCCAAATCTGGATTCTCTCCATTTTGGTGAGAATTCGATTGCTTCTGAATTGCTTGCTGACATGTTGAGAAGTGATTCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATGATGCACATGGTCCAAAAGTCCAAGTTTTCTGTCCTATGTTAAAGGACAAAGGAGATGCAGTAAGGGTGATTGCTGAGAGATGGAAGCTTGTAGTGAATGCAGCTGGTCGGGAGCCAAAGCATTTCATAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGTACTACCACTGTAAATGTGCCCCTTCCTCTTGCATTTGATCCTTTGGTTGATATGGATCCTCGAGTTGTTGTCTCTTTTCTAGACTTACCAAGGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTAAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCGTTGGCCGTTTTTAATGACCCTGCCCGTGCTGCAACTGCAATGAGGAGGTTTGATCACGGCACTGTTTATAAGGGAGCTGTGATGGTGGTTGTTCCACCAAATGTCGGGGCATCAGGAAATCCATGGAAAAAAGATGTTATTCAAGAGCTGGGTTGGAGAGAAGATGCTTGGGGTGATGAGGAGTGGGCTACTGGCTCTGCTAATGTTCAATTGCCTATTAAGAAGAAAGAAGCCCTAATATCTGCTTCAGCAAATCCTTGGAGTGTCTTAAATCAAGAATCCTCTTCAAGTTCATCTGTTGCAGCCATTAAAATTGATGGTTCTAGGAAACACTATGAAAGTAGTGTTGTCACAAAGTTGGAGCCTCGTGATGGTGGATCAAATCTAGGAGGGCAGCCTGCAGGAAACTTTGATGCTTTAGAAGGTGCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG
>Glyma.05g247600.1.p sequence-type=predicted peptide transcript=Glyma.05g247600.1 locus=Glyma.05g247600 ID=Glyma.05g247600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MWQVPSFVKSHAMPGIVLLVCVARQKWKIRNLLSNPNNILNADWDPHLCQLPCESLCHSGHCPPCLQTIFTDLTCSCGTPPPSCQLPCSVPQPCSHPASHSCLFRDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCVKTRQCGLHACGRTCHLPPCDNLSVVTCGAPRRDCRHTCIAPCHPSTPSPDTRCEFPVTITCSCGRITENVPCDAGANYNADVVHEASIIQKLPVLLQPVAANGKKAPLRQRKLMCNDDCAKLERKRVLADAYEITAPNLDSLHFGENSIASELLADMLRSDSKWVLSVEERCKFLVLGKSRGNDAHGPKVQVFCPMLKDKGDAVRVIAERWKLVVNAAGREPKHFIVVHVTPKSRAPARVLGVKGTTTVNVPLPLAFDPLVDMDPRVVVSFLDLPRDADISALVLRFGGKCELVWLNDKNALAVFNDPARAATAMRRFDHGTVYKGAVMVVVPPNVGASGNPWKKDVIQELGWREDAWGDEEWATGSANVQLPIKKKEALISASANPWSVLNQESSSSSSVAAIKIDGSRKHYESSVVTKLEPRDGGSNLGGQPAGNFDALEGADVVDDWEKACE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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