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Report for Sequence Feature Glyma.05g247200

Feature Type:gene_model
Chromosome:Gm05
Start:42060482
stop:42066353
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g247200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17880.1AT tetraticopeptide domain-containing thioredoxin JGI N/AIEA
GO:0034599GO-bp cellular response to oxidative stress EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004791GO-mf thioredoxin-disulfide reductase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0015035GO-mf protein disulfide oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016671GO-mf oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor EnsemblGenomesN/AIEA
GO:0047134GO-mf protein-disulfide reductase activity EnsemblGenomesN/AIEA
KOG0907 KOG Thioredoxin JGI N/AIEA
PTHR22904Panther TPR REPEAT CONTAINING PROTEIN JGI N/AIEA
PTHR22904:SF34Panther HSC70-INTERACTING PROTEIN JGI N/AIEA
PF00085PFAM Thioredoxin JGI N/AIEA

Expression Patterns of Glyma.05g247200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g247200 not represented in the dataset
Glyma.05g247200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g247200
ParalogEvidenceComments
Glyma.08g055600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g247200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g33711 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g247200
>Glyma.05g247200.1 sequence-type=CDS polypeptide=Glyma.05g247200.1.p locus=Glyma.05g247200 ID=Glyma.05g247200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGAACCAGGTACCGATTTTGATGACAATAATTCAGATCCTCCTTTATCCGCACAAGATGACATTATAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAGCCCGATAATGACCCTCCTCAAAAGATGGGAAATCCTTCTGCTGAAGTAACGGAAGAACAGAGGTACTCTCATTCTCTCCCCAGAATGGAACATCTTTTGATAAATTCCTTTCAGTATTGTTTCCCCCCTGCTTTATTGTTTGTTTTACCTTCTGTATCATTTGGAAATCTAAATTTCTTGTTTTCAGCTAGCATCTTTATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAATCCAGACTCAGCCAAAGGATACAAAATACGAGGAATGTCGAGGGCTATGTTGGGACTAAGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTTCGATGAAGAGATTAGTATAGCACTTAAAAAGGTTGAACCTAATGCCAACAAAATTGAGGAGCATAGGAGAAAATGTGAACGCTTAAGAAAACGAAAGGAACAGAAAAGGTCTCCTATTAAGACCGAAACTCCTATCAAGAAGGAGAGCAAGAAACTGAAGCCCAGTCAAAATCGTGATCTTTCACATAAGATTGTACCACTTTACGATCCTGAGTACCTCCATGCAGAAGTGAACTTTGATCATAGTATGAATAAATTGATAACTGTCCTGAAAGATGATCATACGATTGATTATCTTCTACTTTCAGCTATAGATAAAGGTTGTAGTAACTTTCTCTATCTAAGGTGTCAGCATCACACATATCATATAGATTGTGTAGTTCAAGAAGCATTATCTGCTTTAAAAGATGAAGTTAAGTGCTGCATAAAGACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCTTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTGTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGCTGGAATATTAGCAGTGTTCCGACATTCTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGATGGGGGCAGACAAAAGTACCCTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAA
Predicted protein sequences of Glyma.05g247200
>Glyma.05g247200.1.p sequence-type=predicted peptide transcript=Glyma.05g247200.1 locus=Glyma.05g247200 ID=Glyma.05g247200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEPGTDFDDNNSDPPLSAQDDIIESDIELDNADVVEPDNDPPQKMGNPSAEVTEEQRYSHSLPRMEHLLINSFQYCFPPALLFVLPSVSFGNLNFLFSASIFMKLKKPNAAIRDADTALKINPDSAKGYKIRGMSRAMLGLREEAASDLHVASKLDFDEEISIALKKVEPNANKIEEHRRKCERLRKRKEQKRSPIKTETPIKKESKKLKPSQNRDLSHKIVPLYDPEYLHAEVNFDHSMNKLITVLKDDHTIDYLLLSAIDKGCSNFLYLRCQHHTYHIDCVVQEALSALKDEVKCCIKTSRLAILYFTATWCGPCRFISLIYTSLAEKYPKVVFVKVDIDEARDVAAGWNISSVPTFFFVKNGKEVDSVMGADKSTLESKIAQHAGSL*






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