SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g245200

Feature Type:gene_model
Chromosome:Gm05
Start:41922174
stop:41924386
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g245200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18170.1AT FKBP-like peptidyl-prolyl cis-trans isomerase family protein JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0061077GO-bp chaperone-mediated protein folding EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0005528GO-mf FK506 binding EnsemblGenomesN/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0552 KOG FKBP-type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PTHR10516Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR10516:SF122Panther JGI N/AIEA
PF00254PFAM FKBP-type peptidyl-prolyl cis-trans isomerase JGI N/AIEA

Expression Patterns of Glyma.05g245200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g245200
ParalogEvidenceComments
Glyma.08g052800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g245200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g33920 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g245200
>Glyma.05g245200.1 sequence-type=CDS polypeptide=Glyma.05g245200.1.p locus=Glyma.05g245200 ID=Glyma.05g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTTTCTTTGGTTCCCCACCAATTTTCTCCCTCCCCCCTACTATTATTAGAACTCATCACATTTCTTCATCATCACAAACTCCACCACCAACACCTTCACCACAATCTCAGCCTCCAACTTCGTCTCCACAGCAGCTAAGAACAACAAATTTGAATGAGGAATCAGTGCAAGTGTCCACTGAAGCTAAGCAACAGAAGCCCATCAAACCAGTCACTTCATCCACTAAGGTTGGATCCACGGATTGGATAGCCACTTCCTTGACCAGAAGGTTTGGGATAGGAGCTGGTCTTGCATGGGTTGGCTTTCTTGCATTTGGTGTCATCTCAGAACAAATCAAGACTCGCCTTGAGCTGTCTCAGCAAGAGGCAAATACAAGGAACGTTGAGAAGGTGGAAGAGGTGGTGCTTCCTAATGGCATAAGGTACTATGAGTTGAAACTTGGTGGTGGCGCTTCACCAAGGCCGGGAGATTTGGTTGTGATTGATATCATGGGAAAAATTGAAAGTAGTGAAGTGTTTGTAGACACATTTGAGGGGGACAAGAAACCATTGGCTCTAGTGATGGGGTCAAGGCCATATAGTAAGGGAGTCTGTGAAGGTATAGAATATGCACTTAAAACTATGAAGGCTGGAGGCAAGAGGAAGGTAATAGTCCCTCCTAAATTGGGGTTTGGAGAGAATGGTGCTGACTTAGGCACTGGTGTGCAAATTCCTCCACTTGCAACACTTGAATACATTCTAGAGGTTGAAAAAGTCTCCATTGCACCCGCTTAA
Predicted protein sequences of Glyma.05g245200
>Glyma.05g245200.1.p sequence-type=predicted peptide transcript=Glyma.05g245200.1 locus=Glyma.05g245200 ID=Glyma.05g245200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAFFGSPPIFSLPPTIIRTHHISSSSQTPPPTPSPQSQPPTSSPQQLRTTNLNEESVQVSTEAKQQKPIKPVTSSTKVGSTDWIATSLTRRFGIGAGLAWVGFLAFGVISEQIKTRLELSQQEANTRNVEKVEEVVLPNGIRYYELKLGGGASPRPGDLVVIDIMGKIESSEVFVDTFEGDKKPLALVMGSRPYSKGVCEGIEYALKTMKAGGKRKVIVPPKLGFGENGADLGTGVQIPPLATLEYILEVEKVSIAPA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo