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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56150.1 | AT | eukaryotic translation initiation factor 3C | JGI | N/A | IEA |
| GO:0001731 | GO-bp | formation of translation preinitiation complex | EnsemblGenomes | N/A | IEA |
| GO:0001732 | GO-bp | formation of cytoplasmic translation initiation complex | EnsemblGenomes | N/A | IEA |
| GO:0002183 | GO-bp | cytoplasmic translational initiation | EnsemblGenomes | N/A | IEA |
| GO:0006412 | GO-bp | translation | EnsemblGenomes | N/A | IEA |
| GO:0006413 | GO-bp | translational initiation | EnsemblGenomes | N/A | IEA |
| GO:0006413 | GO-bp | translational initiation | JGI | N/A | IEA |
| GO:0006446 | GO-bp | regulation of translational initiation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005852 | GO-cc | eukaryotic translation initiation factor 3 complex | EnsemblGenomes | N/A | IEA |
| GO:0005852 | GO-cc | eukaryotic translation initiation factor 3 complex | JGI | N/A | IEA |
| GO:0016282 | GO-cc | eukaryotic 43S preinitiation complex | EnsemblGenomes | N/A | IEA |
| GO:0033290 | GO-cc | eukaryotic 48S preinitiation complex | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003743 | GO-mf | translation initiation factor activity | EnsemblGenomes | N/A | IEA |
| GO:0003743 | GO-mf | translation initiation factor activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0031369 | GO-mf | translation initiation factor binding | EnsemblGenomes | N/A | IEA |
| GO:0031369 | GO-mf | translation initiation factor binding | JGI | N/A | IEA |
| KOG1076 | KOG | Translation initiation factor 3, subunit c (eIF-3c) | JGI | N/A | IEA |
| PTHR13937 | Panther | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 (EIF3S8)-RELATED | JGI | N/A | IEA |
| PF01399 | PFAM | PCI domain | JGI | N/A | IEA |
| PF05470 | PFAM | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | JGI | N/A | IEA |
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Glyma.05g245100 not represented in the dataset |
Glyma.05g245100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g052900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g33930 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g245100.1 sequence-type=CDS polypeptide=Glyma.05g245100.1.p locus=Glyma.05g245100 ID=Glyma.05g245100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACGGTGGGTGAATCTGGTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCATTGTGAGGTCAGCAAAGGATAAACGTTTCGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAGAAGGTCCCCAATCTTTACATCAAGGCACTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAGGAGAGCGAGGAAGAGTATGACAGTGATGGTGAGATTATTGATCCAGATCAGCTTCAAAAACCAGAAGCAAAATCTGATTCGGAGGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTCGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATGTGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTGCAGTACCCAAATATAGTGGCTGATGATTTGGTTGAACCAGACGAGAATGAAACTCAGAAAGGTCCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTTGCGCGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATGTATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCATCATGCTCTACTTGATGAGTTCTCAACAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTTTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCCTATCATATGCACATCAATCTAGAGCTCCTGGAGGCAGTACATCTTGTTTCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTAACAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTGTGGAAATTTGTGAGAAATCGAGACACCGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCGTTGAGCCTGGATCAACTCACAAAATTTTTTGATCTCTCTGTTTGTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCCAGGCTTCAGGCATTGGCATTCCAATTGACCGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAGCAGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGTAGAGATGGCCAGGACTATGCTGCCGCCGCGGCTGCCGGCAGTGGTACAGCCTCTTCCGGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGGCCAATGGCATTGGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGGGGTTCGTATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGAGATGGATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCCTGA
>Glyma.05g245100.1.p sequence-type=predicted peptide transcript=Glyma.05g245100.1 locus=Glyma.05g245100 ID=Glyma.05g245100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASRFWTQGGSDSEEEESDYDEEVDTTVGESGSQAVTSRYLQDNASDSDDSDGQKRIVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEESEEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHVPINVWKKCVQNMLIILDILVQYPNIVADDLVEPDENETQKGPEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSMIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLNKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVCRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSVLAESNEKAAEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASSGGRWQDLSLSQPRQGSGRAGYGGRPMALGQAAGSGYSRGRGRGSYGGSGRTAQRGSALRGPQGDGSTRMVSLKGVRA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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