Report for Sequence Feature Glyma.05g243600
Feature Type: gene_model
Chromosome: Gm05
Start: 41821542
stop: 41824286
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.05g243600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18165.1 AT
modifier of snc1,4
JGI N/A IEA
GO:0006397 GO-bp
mRNA processing
EnsemblGenomes N/A IEA
GO:0006397 GO-bp
mRNA processing
JGI N/A IEA
KOG3096
KOG
Spliceosome-associated coiled-coil protein
JGI N/A IEA
PTHR13296 Panther
BCAS2 PROTEIN
JGI N/A IEA
PF05700 PFAM
Breast carcinoma amplified sequence 2 (BCAS2)
JGI N/A IEA
Expression Patterns of Glyma.05g243600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.05g243600
Paralog Evidence Comments
Glyma.08g051400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.05g243600 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma05g34090 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.05g243600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g243600.2 sequence-type=transcript locus=Glyma.05g243600 ID=Glyma.05g243600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGGAAACTTTTGGCCTTGATAAAATAGCCCAACGCGGTCCTTCTTTCATCTTCTTTTCTGCGCGGAGGAAAACCTTCACTATCTCTCTCTCTTCAAGCAAGCGACCATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCCGTAATGAATTTGTTCAGCCTAAAACTATGCTATTGTACCTCTCAATGTTTAGTACAGATCTGGGTTTCACTAATCCAGTTCTAGTCCAGCCTACCATCATCCTCATTTCCTCCAATGGCTTCCATTTCGACTACATGTTCAAGTCCCCAACTCACAACATCCACCGTTTAATCCTAAACGGCACTGAGGCCGAATTAATAGCATCATAGGGAGGCTCGTTCAAGTTTTGGAACAAAGAGGAGTTAGACGTCCAATGCCTGGTTAATTGGTGCAAGGGTGCAAACGATTCTTTGATCCTGAATCTAGATCTGTGGATTTGTTTACCTTTTGTGATACATGTTTTCAATTTTTGTTTGTTGTGGATTCAAATTTGTTGCTGCTGTCATAGATATTCAATGAGCTAATATGTTGAAAACCTAAGGGATGCAAATTCTGCAGTTTTTAACCTCAGAAAATTGTTGA
Coding sequences of Glyma.05g243600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g243600.1 sequence-type=CDS polypeptide=Glyma.05g243600.1.p locus=Glyma.05g243600 ID=Glyma.05g243600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGA
>Glyma.05g243600.2 sequence-type=CDS polypeptide=Glyma.05g243600.2.p locus=Glyma.05g243600 ID=Glyma.05g243600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGGAAGCAACGGGGGAGTTCTAATGCTGGAAGCCCCACCGTCTTACGGTAGGCCTACCGGTTCTAACGCGGAAATAATCGACGCATTGCCTTACATTGATGACGACTACGCAGACCCCAGAGTCAAACTTGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAAAGATTTCCCTCCTCTTCCCAACTCCAATTTCCAGAACTACCCAATGATTGCGAGAGAGTACGAACGTGTGAGAGCCGGAAGACCTCCCGTTGCTCTTGATAGATCGCGCTACGAATTGGAAATGCCGCCGGCGAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACACCTGCTGCAATATCAGATTATGAGGATGGAAAATTTGGATTTGATGTTAAAATATGGTCCCGATACCTGGAAACAACACAACCAAAGATTGGAAGTATACTTATCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAATTGAAAAGAGGAGCAGCAGAAAGAGGCTGGAACTTGGAAGCTGTAACTGAAAATGGCCAATTGGCAAAATCCGAATTATGA
Predicted protein sequences of Glyma.05g243600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.05g243600.1.p sequence-type=predicted peptide transcript=Glyma.05g243600.1 locus=Glyma.05g243600 ID=Glyma.05g243600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADGSNGGVLMLEAPPSYGRPTGSNAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNFQQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKRGAAERGWNLEAVTENGQLAKSEL*
>Glyma.05g243600.2.p sequence-type=predicted peptide transcript=Glyma.05g243600.2 locus=Glyma.05g243600 ID=Glyma.05g243600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADGSNGGVLMLEAPPSYGRPTGSNAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLKDFPPLPNSNFQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDETAWKQALHRAQHLLQYQIMRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKRGAAERGWNLEAVTENGQLAKSEL*