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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73690.1 | AT | cyclin-dependent kinase D1;1 | JGI | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | JGI | N/A | IEA |
| GO:0045944 | GO-bp | positive regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0051726 | GO-bp | regulation of cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0070985 | GO-cc | TFIIK complex | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | JGI | N/A | IEA |
| GO:0004674 | GO-mf | protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004693 | GO-mf | cyclin-dependent protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| KOG0659 | KOG | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 | JGI | N/A | IEA |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | N/A | IEA |
| PTHR24056:SF93 | Panther | JGI | N/A | IEA | |
| PF00069 | PFAM | Protein kinase domain | JGI | N/A | IEA |
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Glyma.05g243000 not represented in the dataset |
Glyma.05g243000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g050900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g34150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g243000.1 sequence-type=CDS polypeptide=Glyma.05g243000.1.p locus=Glyma.05g243000 ID=Glyma.05g243000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCATTCCAAAAAAGTGGCCGATAGATATCTAAAGCGTGAAGTCCTTGGTGAAGGTACTTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGGCAGACCGTTGCAATTAAGAAAATTCGGCTTGGCAAACGGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCAGGTGATACAAAATCCTACCTTCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCACCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGTTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGTTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCTGCATTTGGCATTCCAACAGCTCCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTGGAATACCAATATGTTCTTGCCCCCCCTCTGCGTTCCTTATTTCCGATGGCAACTGATGATGCTCTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAACTAGAATTTCAGTGCACCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGGTTTCTGATTTCAATTCACAGGAGGGTCCTACTATATTATCACCTCCTAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAGACAGACAACTGATGATAATACTGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCATATTTGAAAAGAAAATTAGATCTAGAATTTCAATAG
>Glyma.05g243000.1.p sequence-type=predicted peptide transcript=Glyma.05g243000.1 locus=Glyma.05g243000 ID=Glyma.05g243000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDHSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKRKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGIPTAPQWPDMVYLPDYVEYQYVLAPPLRSLFPMATDDALDLLSKMFTYDPKTRISVHQALEHRYFSSAPLPSDPDKLPRPAPKRESRVSDFNSQEGPTILSPPRKSRRVMPGRDGFEGNSLQADKVDASFGDFRQTTDDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSYLKRKLDLEFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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