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Report for Sequence Feature Glyma.05g242700

Feature Type:gene_model
Chromosome:Gm05
Start:41760764
stop:41763104
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g242700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18190.1AT TCP-1/cpn60 chaperonin family protein JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006458GO-bp 'de novo' protein folding EnsemblGenomesN/AIEA
GO:0044267GO-bp cellular protein metabolic process JGI N/AIEA
GO:0061077GO-bp chaperone-mediated protein folding EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005832GO-cc chaperonin-containing T-complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0044183GO-mf protein binding involved in protein folding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
KOG0358 KOG Chaperonin complex component, TCP-1 delta subunit (CCT4) JGI N/AIEA
PTHR11353Panther CHAPERONIN JGI N/AIEA
PTHR11353:SF26Panther T-COMPLEX PROTEIN 1 SUBUNIT DELTA JGI N/AIEA
PF00118PFAM TCP-1/cpn60 chaperonin family JGI N/AIEA

Expression Patterns of Glyma.05g242700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g242700
ParalogEvidenceComments
Glyma.08g050100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g242700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34190 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g242700
>Glyma.05g242700.1 sequence-type=CDS polypeptide=Glyma.05g242700.1.p locus=Glyma.05g242700 ID=Glyma.05g242700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCAATCACAGCTCCCCAGCACCGATCCTCGAAGACGGAGTCCTACGTTGACAACAAGCGCAAGGATGACATCCGCCACGCCAACATCGTGGCCGCACGCTCCGTCGCCAACGCGGTTCGCACCAGTCTGGGCCCCAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTCATCATCACCAATGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACTCCGCCGCCGGCGACGGCACCACTACCGTCGTCGTCATTGCTGGCGCCCTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCACGGCATCCACCCCACCGTCGTCTCCGACGCCCTCCACAAGGCTGCCGTGAAGGCCGTCGACGTTCTCACCGCCATGGCCGTCCCCGTCGAGCTCTCTGACCGCGACTCCCTCGTGAAGTCCGCTAGCACATCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACGCTCCTGGCTCCCCTCGCCGTCGACGCCGTTCTTTCCGTCGTCGATGCCGCCAAGCCCGACATGGTCGACCTCCGCGATGTGAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGACACCGAGCTCGTGAAAGGTCTCGTCTTTGACAAGAAGGTCAGCCATGCCGCCGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATACAGTTCCAGATTTCGCCTCCCAAAACAGACATCGAACAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTCTAAAGGAAGAGCGTAGTTATATTCTCGGCATGATTAAGAAGATCAAGGCCACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCTGTTACTGATTTGTCCTTGCATTACCTTGCCAAAGCTAAGATTTTGGTCATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACCAAGACACTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCACTGAGAAGTTGGGTTACGCTGATCTTGTGGAAGAGGTTTCTCTTGGGGATGGGAAGATTGTGAAGATTACTGGGATTAAGGAGATGGGGAAGACCACCACTGTGCTTGTACGTGGGTCTAATCAGCTTGTTCTCGATGAGGCCGAGAGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCCGGCGGTGGTGCGCCTGAGATTGAGCTCTCCAGGCAGCTGGGTGCCTGGGCTAAGGTGTTGCATGGGATGGAGGGTTACTGTGTGAGGGCATTTGCTGAGGCGCTTGAAGTTATTCCCTATACTCTGGCTGAGAATGCTGGTTTGAACCCGATTGCCATTGTTACCGAGCTGAGGAATCGTCATGCACAGGGTGAGATAAATGCTGGAATAAATGTGAGGAAGGGTCAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCCCTTCTTGTTAGCACAAGTGCGATCATGTTGGCGACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
Predicted protein sequences of Glyma.05g242700
>Glyma.05g242700.1.p sequence-type=predicted peptide transcript=Glyma.05g242700.1 locus=Glyma.05g242700 ID=Glyma.05g242700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAITAPQHRSSKTESYVDNKRKDDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTVVSDALHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAAKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRTEKLGYADLVEEVSLGDGKIVKITGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAIMLATECVRMILKIDDIVTVR*






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