Glyma.05g240100

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Report for Sequence Feature Glyma.05g240100

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41537824
stop:	41541096
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g240100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43350.1	AT	glutathione peroxidase 3	JGI	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	EnsemblGenomes	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0098869	GO-bp	cellular oxidant detoxification	EnsemblGenomes	N/A	IEA
GO:0004601	GO-mf	peroxidase activity	EnsemblGenomes	N/A	IEA
GO:0004602	GO-mf	glutathione peroxidase activity	EnsemblGenomes	N/A	IEA
GO:0004602	GO-mf	glutathione peroxidase activity	JGI	N/A	IEA
GO:0016209	GO-mf	antioxidant activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
KOG1651	KOG	Glutathione peroxidase	JGI	N/A	IEA
PTHR11592	Panther	GLUTATHIONE PEROXIDASE	JGI	N/A	IEA
PF00255	PFAM	Glutathione peroxidase	JGI	N/A	IEA
PWY-4081	SoyCyc9	glutathione-peroxide redox reactions	Plant Metabolic Network		ISS
GN7V-63365	SoyCyc9-rxn	phospholipid-hydroperoxide glutathione peroxidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g240100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g240100 not represented in the dataset	Glyma.05g240100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g240100

Paralog	Evidence	Comments
Glyma.08g047200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g240100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g34490	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g240100

Limit To All Plant Sequences

>Glyma.05g240100.2 sequence-type=transcript locus=Glyma.05g240100 ID=Glyma.05g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATATACAATTTAATTTGCGTTCACATGAGAACCGTCGTGACGTGCATTTTCTACATTGCAACACCGCGATATGAACGATGCAAAATAGTTTCAGATACGTCGCGTTGATTGATTGATATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGAATAGTAAGATTTGATTCTACATATCTAATGTGCTGAGGACATAGGGAATCTGTCCGGTGCCTTCGAAGGACAAGTAGCAATATGTATCATAAGTTAATATATGCCCTGAAAAGTTCTTAATGTATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTATAAATTGGTGTTCTCACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATGCATCTTTATGTTATTATGCATGTCC

>Glyma.05g240100.3 sequence-type=transcript locus=Glyma.05g240100 ID=Glyma.05g240100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATATACAATTTAATTTGCGTTCACATGAGAACCGTCGTGACGTGCATTTTCTACATTGCAACACCGCGATATGAACGATGCAAAATAGTTTCAGATACGTCGCGTTGATTGATTGATATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGACATAGAGAAGCTTTTGCAATCTTGAATAGTAAGATTTGATTCTACATATCTAATGTGCTGAGGACATAGGGAATCTGTCCGGTGCCTTCGAAGGACAAGTAGCAATATGTATCATAAGTTAATATATGCCCTGAAAAGTTCTTAATGTATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTATAAATTGGTGTTCTCACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATGCATCTTTATGTTATTATGCATGTCC

Coding sequences of Glyma.05g240100

Limit To All Plant Sequences

>Glyma.05g240100.1 sequence-type=CDS polypeptide=Glyma.05g240100.1.p locus=Glyma.05g240100 ID=Glyma.05g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGGTTAGAGATATTATAGTGCTTATATATTTTAAGTAG

>Glyma.05g240100.2 sequence-type=CDS polypeptide=Glyma.05g240100.2.p locus=Glyma.05g240100 ID=Glyma.05g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATAGAGAAGCTTTTGCAATCTTGA

>Glyma.05g240100.3 sequence-type=CDS polypeptide=Glyma.05g240100.3.p locus=Glyma.05g240100 ID=Glyma.05g240100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTGGTTGACTTTCTGGAACTGCATATCTATCCTCGTGTTGTCTTTTGCTTTCTTCTTCTTCTATTGTCACACATACACATCTACTCCTTCCCTCATGGCTGAGCAATCTTCCAAGTCCATTTACGATTTCACAGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATAATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCACAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCATGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTTGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGCGCCACTTTATAAGTTTTTAAAGGAGCAGAAAGGGGGAATATTTGGTGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGACATAG

Predicted protein sequences of Glyma.05g240100

Limit To All Plant Sequences

>Glyma.05g240100.1.p sequence-type=predicted peptide transcript=Glyma.05g240100.1 locus=Glyma.05g240100 ID=Glyma.05g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEVRDIIVLIYFK*

>Glyma.05g240100.2.p sequence-type=predicted peptide transcript=Glyma.05g240100.2 locus=Glyma.05g240100 ID=Glyma.05g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEKDIEKLLQS*

>Glyma.05g240100.3.p sequence-type=predicted peptide transcript=Glyma.05g240100.3 locus=Glyma.05g240100 ID=Glyma.05g240100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKWLTFWNCISILVLSFAFFFFYCHTYTSTPSLMAEQSSKSIYDFTVKDISGNDVSLNNYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAAPLYKFLKEQKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIET*

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