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Report for Sequence Feature Glyma.05g240000

Feature Type:gene_model
Chromosome:Gm05
Start:41530100
stop:41536318
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g240000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48520.1AT GLU-ADT subunit B JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0070681GO-bp glutaminyl-tRNAGln biosynthesis via transamidation EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0030956GO-cc glutamyl-tRNA(Gln) amidotransferase complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity JGI N/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor EnsemblGenomesN/AIEA
GO:0016884GO-mf carbon-nitrogen ligase activity, with glutamine as amido-N-donor JGI N/AIEA
GO:0050567GO-mf glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity EnsemblGenomesN/AIEA
KOG2438 KOG Glutamyl-tRNA amidotransferase subunit B JGI N/AIEA
PTHR11659Panther GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED JGI N/AIEA
PF02637PFAM GatB domain JGI N/AIEA
PF02934PFAM GatB/GatE catalytic domain JGI N/AIEA
PWY-5921SoyCyc9 glutaminyl-tRNAgln biosynthesis via transamidation Plant Metabolic Network ISS
GN7V-47010SoyCyc9-rxn asparaginyl-tRNA synthase (glutamine-hydrolysing) Plant Metabolic Network ISS

Expression Patterns of Glyma.05g240000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g240000
ParalogEvidenceComments
Glyma.08g047100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g240000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34500 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g240000
>Glyma.05g240000.1 sequence-type=CDS polypeptide=Glyma.05g240000.1.p locus=Glyma.05g240000 ID=Glyma.05g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCACAATATTCAGAAGCCTCCAAGTTCACCCCTTTCTGCTTTATCCAACAACATTCCTCAGACGAAGAAATGAGGTTTTTCATTTGGCGTCCAAAGCCACACAATCCCAAACAGACACCCAACAGACCAAGGTTACAACAAGCAGCACACAGTCCAAAAAGCTCGACAAAATCCCCAAAGACTATGAAGCCATCATTGGGATTGAAACACATGTTCAGCTCTCCACTCTGACCAAAGCCTTTTGTGGTTGCCCTTACAGTTATGGGTCTCCACCCAACAGCAGCATTTGCCCCATTTGCATGGGCTTGCCTGGTGCTTTGCCTGTTTTGAACTCCAAGATCATTGATTTTGCTGTCAAGTTGGGCCTTGCTCTTAATTGCAACTTGGCTTTCAACTCCAAGTTTGACAGGAAGCAGTATTTCTACCCTGACCTTCCGAAAGGGTATCAGATTTCTCAGTTTGATGTGCCAATTGCCACTGCTGGTTTTCTTGATGTGGATATTCCTGTTGAGTTTGGTGGGGGCCACAAGAGGTTTGGCATTACAAGGGTTCACATGGAAGAGGATGCAGGGAAGCTCCTACATGCAGAGAATGGAAATTACTCACAGGTTGATCTAAATAGGGCAGGGGTACCTTTGCTTGAGATAGTTTCTGAGCCTGACATGAGAAATGGTATTGAAGCAGCAGAATATGCGGCAGAATTACAGAGGTTGGTGCGGTATTTGGGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGACCTATTGGGCAATCAAAGTTTGGGACAAAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGAGCAGAGCTATTGATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTCAAGGCCGGGAAGATCAGATAGTACAAGAAACTCGTTTATGGGAAGAAGGCTCTCAGAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCCAGAAATTAAGCGGAGAAGATATGAGCAGATGGGCTTAAGCATGCAAGATGTTCTTTTCCTGGCTAATGATAAAAATATTGCAGATTTTTTTGATGCAACTCTTGCAAAAGGTGCTGACCCAAAGCTGGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAAAAGTTGACCATAAATGAGATAAAGCTTACACCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAACCATTAGTAGCAAGATTGGGAAGGAGATACTATTTGAGCTATTAGCCAAGGGTGGAACTGTGAAGGAACTCATAGAAAAAAAGGACTTGGTTCAGATAGCAGATCCCGTTGAGATTGAAAAAATGGTGGACAAAATTATTGCGGACAATCCAAAACAGGTAGAGCAATATCGAGGAGGCAAAACTAAGCTACAAGGTTTTTTTGCTGGCCAGGTAATGAAATTATCTAAAGGAAAGGCAAATCCAGGTCTCCTTAACAAGATCCTCTTGGAGAAATTGAATTCAAAGAGCTGA
Predicted protein sequences of Glyma.05g240000
>Glyma.05g240000.1.p sequence-type=predicted peptide transcript=Glyma.05g240000.1 locus=Glyma.05g240000 ID=Glyma.05g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTIFRSLQVHPFLLYPTTFLRRRNEVFHLASKATQSQTDTQQTKVTTSSTQSKKLDKIPKDYEAIIGIETHVQLSTLTKAFCGCPYSYGSPPNSSICPICMGLPGALPVLNSKIIDFAVKLGLALNCNLAFNSKFDRKQYFYPDLPKGYQISQFDVPIATAGFLDVDIPVEFGGGHKRFGITRVHMEEDAGKLLHAENGNYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPIGQSKFGTKVEIKNLNSFSSVSRAIDFEISRQVQLHSQGREDQIVQETRLWEEGSQRTITMRKKEGLADYRYFPEPDLPAVILSQEYVDGIKNSLPELPEIKRRRYEQMGLSMQDVLFLANDKNIADFFDATLAKGADPKLVANWIMSDIAAFMKNEKLTINEIKLTPEELSELIASIKGGTISSKIGKEILFELLAKGGTVKELIEKKDLVQIADPVEIEKMVDKIIADNPKQVEQYRGGKTKLQGFFAGQVMKLSKGKANPGLLNKILLEKLNSKS*






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