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Report for Sequence Feature Glyma.05g239900

Feature Type:gene_model
Chromosome:Gm05
Start:41527555
stop:41529639
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g239900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12400.1AT Nucleotide excision repair, TFIIH, subunit TTDA JGI N/AIEA
GO:0006289GO-bp nucleotide-excision repair EnsemblGenomesN/AIEA
GO:0006289GO-bp nucleotide-excision repair JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0000439GO-cc core TFIIH complex EnsemblGenomesN/AIEA
GO:0000439GO-cc core TFIIH complex JGI N/AIEA
KOG3451 KOG Uncharacterized conserved protein JGI N/AIEA
PF06331PFAM Transcription factor TFIIH complex subunit Tfb5 JGI N/AIEA

Expression Patterns of Glyma.05g239900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g239900
ParalogEvidenceComments
Glyma.08g047000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g239900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g239900
>Glyma.05g239900.1 sequence-type=CDS polypeptide=Glyma.05g239900.1.p locus=Glyma.05g239900 ID=Glyma.05g239900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATTAGAAAAAAACTTTGAATGCTTAGTTTGGCATGGCACAGAAAGTGAAAAATTTTTCCAATCCCATCATCCTCTCTGTCTCGCAGGGGACAGCCACCAAGAAAGGCAATTTACAGGAAGGTTATACGACATGGTCAATGCCACTAAAGGGGTCTTTATTTCCTGTGACATACCTATGGCACAATATATCATCAACATGAATGCTTCATTGCCTGCATCTGACAAGTTCATTATACATATCTTGGATAATACCCATATGTTTGTTCAACCTCATGTTGAGCAAATGATACGAAGTCAAATTGCCAAGTTTAGAGAGGACAATACATATGTCAAGCCTAATTGA
Predicted protein sequences of Glyma.05g239900
>Glyma.05g239900.1.p sequence-type=predicted peptide transcript=Glyma.05g239900.1 locus=Glyma.05g239900 ID=Glyma.05g239900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLEKNFECLVWHGTESEKFFQSHHPLCLAGDSHQERQFTGRLYDMVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSQIAKFREDNTYVKPN*






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