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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14850.1 | AT | nucleoporin 155 | JGI | N/A | IEA |
| GO:0000972 | GO-bp | transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | EnsemblGenomes | N/A | IEA |
| GO:0006405 | GO-bp | RNA export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006606 | GO-bp | protein import into nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006913 | GO-bp | nucleocytoplasmic transport | EnsemblGenomes | N/A | IEA |
| GO:0036228 | GO-bp | protein localization to nuclear inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0005643 | GO-cc | nuclear pore | EnsemblGenomes | N/A | IEA |
| GO:0044611 | GO-cc | nuclear pore inner ring | EnsemblGenomes | N/A | IEA |
| GO:0017056 | GO-mf | structural constituent of nuclear pore | EnsemblGenomes | N/A | IEA |
| KOG1900 | KOG | Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) | JGI | N/A | IEA |
| PTHR10350 | Panther | NUCLEAR PORE COMPLEX PROTEIN NUP155 | JGI | N/A | IEA |
| PTHR10350:SF6 | Panther | NUCLEAR PORE COMPLEX PROTEIN NUP155 | JGI | N/A | IEA |
| PF03177 | PFAM | Non-repetitive/WGA-negative nucleoporin C-terminal | JGI | N/A | IEA |
| PF08801 | PFAM | Nup133 N terminal like | JGI | N/A | IEA |
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Glyma.05g238800 not represented in the dataset |
Glyma.05g238800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g045900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g34600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g238800.1 sequence-type=CDS polypeptide=Glyma.05g238800.1.p locus=Glyma.05g238800 ID=Glyma.05g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTCACGAATGCGGGCCTTGTTATCAGCGATCGCATTGGTCGTGAAGTTTCGTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACGCTAGCCACCCTTATTCCACTCACCCCCGAGAGTGGCCCCCTTTAGTTGAGGTGGTGAATACCTGGGAGTTGCCTCCCGTGCTCATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAAATACGAAGGGCGTGGGCGTCTGTGGACAATTCATTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATTTAGTGGGGAAGAGCAAGCTATTTGTGCAGTTGGTCTTGCAAAATCAAAACCTGGAGTTTTTGTTGAAGCTATTCAATATCTTTTAGTTTTAGCGACACCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGTTCAGATCCATTTGCAGAAGTTACATTGCAGCCATTGCCAGAGCATACAATACCATCTGATGGGGTTACAATGACTTGTGTGGCATGTACTAATAAGGGCCGCATTTTCCTTGCTGGTCGGGATGGCCACATATATGAGATTCTTTATTCAACTGGTTCTGGATGGCAAAAACGGTGCAGAAAAATCTGCATCACTGCTGGTTTGGGAAGTGTAATTTCAAGATGGGTTATACCAAATGTATTCAGTTTTGGAGCTGTTGACCCCATTGTTGAAATGGTTTTTGACAACGAGAGACAAATATTGTATGCACGAACGGAAGAGATGAAGCTTCAAGTTTATGTTCTAGGACCAAACGGTGATGGCCCCTTAAAGAAAGTAGCTGAAGAAAGGAATCTTGTCAATCAGAGGGATGCACATTATGGAGCTAGACAATCGACAGGGTCAAGAGTCTCTAGTCGATCTCCAAAGCCATCTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTGGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGACTGGGTTCAACACCAACCACCACAAGCCTAGCTGTTTAAAGGTTGTCACTACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACCTTTGGAGCCATGGCTCTTGCTGGTAGACCTCCGAATGAGGATCTCTCCCTGAAAGTTGAGGCAGCTTATTATTCTGCTGGAACTCTTATCCTTTCTGATGCATCACCTTCGACCATGTCTTCACTCCTTGTTTTGAACAGGGATTCAAGCTCACAATCATCACCGTCGGGTAATCTAGGAACAAGTACGAGAAGTTCCCGGGCATTAAGGGAGTCGGTATCTTCTTTACCAGTTGAAGGACGAATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACCGCAGCTACTGTGCAGTCTCTATATTCGGAAATTGAGTTTGGTGGTTATGAGAGCTCTATGGAATCATGTGAAAGGGTGTCTGGCAAACTCTGGGCAAGAGGGGATCTTGCAACCCAACATATACTACCAAGAAGAAGGATTGTCGTCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTATAAGGCGGCTATTGGAATCCAACTCTCCACGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCAGGTGAGGCAGCTGCAATGTGTCTAATGTTAGCTGCAAGAATAGTGCATTCTGAAAACCTTATCAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGTAGTAATGCATTATCAAACACAAGAAGTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTATTTTCAGGTGCACATGAAGGGCTCTGTTTGTGTTCATCTAGATTACTTTTTCCTCTGTGGGAACTTCCTGTAATGGTTGTAAAGGGAAGTTTAGGCCCTTCAGGCACTCTATCTGAAAATGGAGTAGTTGTGTGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACAGAAACTCCGATCTTTGGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGCTGTGTAGCAGGTTTAGGAGATCTGAGTGGTTCCATTCTGTATGGTAATGGTTCGGCATTAGGAGCCGGGGATCGAAACATGGTAAGAAACTTATTTGGTGCGTATTCCAGAAATATGGAGTCCAATGGTGGCAGAACATCTAATAAACGGCAAAGGTTGCCATATAGTCCTGCTGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGTGAAGCCCTATTTTTGCTTCAACTTCTTTCACAGCATCACGTGACTCGATTGATTCAGGGATTTGATTCTAACCTTCAACAAGCATTAGTTCAGTTGACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCATCTTGCTACAAGACTTATATCTGTTCTCATGGAGTATTATACTGGTCCTGATGGCAGGGGCACTGTAGATGACATTAGTAGGAGATTGAGAGATGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAAATTCTTTTTAGCCGTGGAAGCCCTAGAGAGAGCTGCTATGACTATAGATGCTAAGGACAAGGAGAATCTTGCAAGGGAAGCATTTAATTCCTTAAGTAAAGTTCCAGAGTCTGTGGACCTACGAACTGTTTGCAAACGTTTTGAGGATTTAAGATTTTATGAAGCTGTTGTGCGCTTACCACTACAAAAGGCACAGGCTATTGACCCTGCAGGCGATGCTTATAATGATGAAATTGATGCAACTGTCAGAGAGCAAGCACTTGCTCAGCGGGGGCAGTGTTATGAAATAATTATCGGTGCTTTGCGGTCTCTGAAAGGTGACACCTTACAGAGAGAATTTGGGACTCCTATTAGATCAACTGCTTCACAATCTGCTCTTGATCCAGCCTCTCGGAAAAAATATATATGTCAAATTGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCACGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTCGAGAATGAATTGCTAGAGTATGGGGGTCCTGACCTGTTGCCATTTTTGCAAAGTGCCGGTCGTAATTCTCTACACGAGGTTCGTGCTGTGACAGCCACAATTTCTCCAGTGGGACAATCGGGAGCACCTATGTCATCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTTTTGAAACGCCAACATATGCTTGCAGCTCATGCGTTGCTTAGACTAGCTGAAAGGCGTTCTATTGATGGAGTTCCTACTCTTGAACTGAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCCAAAAATGCAACTAATAGTGATGGGTTAGTAGGTTCTGGTCGAAGTTCCATTGACAGTGGGTTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTTCTTCGGTTCCAGATAAAAATCAAAGAAGAACTAGAGTCTGTGGCTTCCAGGTCTGATGTTTTACCTGCCACACCAGATTCTGCTGAAAATGGTGTAGTGCCTGAGGGAAGTTCTACTGCTGATGCTAATTTTGCAAATGCAACACGAGAGAAGGCTAAAGAGCTAGCTTCAGATGTAAAGAGCATAACCCAGTTATATAATGAATATGCTGTTCCCTTTGGGCTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTTTTCCAGTGATACTGACAGCAGCATTGTCAGAGAGACATGGGCTAGACTTATAGATCAAGCTATATCAAGAGGGGGTATTGCTGAAGCTTGCTCAGTACTAAAGAGGGTCGGGCCCCGCATTTATCCTGGTGATGGAGCTGTTTTACCACTCGACATTATTTGTCTTCACTTAGAGAAGGCTGGACTGGAGAGGTTAAATTCTGGGGTTGAAGCTGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCTGTATTGAATGCATATGACCAATTGTTATCAAATGGGGCTATTTTGCCATCCGCAAGTGTTAGATTACGTATGCTGAGATCGGTTCTAGTGGTACTTCGAGAGTGGGCAATGTCTGTATATTCACAAAGAATGGGTAGCAGTGCCGCTGGGCATTCCCTAATACTAGGTGGAGGATTCTCATCGGAACGTACTATTGCTAGCCAAGGAATTCGGGACAAGATCACAAGTGCAGCAAACAGGTATATGACTGAATTGCGGAGGTTAGCCCTTCCACAGAACCAAACAGAACATGTCTACCGAGGTTTTAGAGAACTTGAAGAATCGTTTATAAGCCAACATTCATTTGATCGATTTTGA
>Glyma.05g238800.1.p sequence-type=predicted peptide transcript=Glyma.05g238800.1 locus=Glyma.05g238800 ID=Glyma.05g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSWEDEIVMRDVTNAGLVISDRIGREVSSQLDLEEALEASRYASHPYSTHPREWPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGGADGSDPFAEVTLQPLPEHTIPSDGVTMTCVACTNKGRIFLAGRDGHIYEILYSTGSGWQKRCRKICITAGLGSVISRWVIPNVFSFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGPLKKVAEERNLVNQRDAHYGARQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGAMALAGRPPNEDLSLKVEAAYYSAGTLILSDASPSTMSSLLVLNRDSSSQSSPSGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVQSLYSEIEFGGYESSMESCERVSGKLWARGDLATQHILPRRRIVVFSTMGMMEIVFNRPLDIIRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSNALSNTRSAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGSLGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSALGAGDRNMVRNLFGAYSRNMESNGGRTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSNLQQALVQLTFHQLVCSEEGDHLATRLISVLMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERAAMTIDAKDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQAIDPAGDAYNDEIDATVREQALAQRGQCYEIIIGALRSLKGDTLQREFGTPIRSTASQSALDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRNSLHEVRAVTATISPVGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLELRCQYLSNAVLQAKNATNSDGLVGSGRSSIDSGFLDLLEGKLAVLRFQIKIKEELESVASRSDVLPATPDSAENGVVPEGSSTADANFANATREKAKELASDVKSITQLYNEYAVPFGLWEICLEMLYFANFSSDTDSSIVRETWARLIDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVEAVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSASVRLRMLRSVLVVLREWAMSVYSQRMGSSAAGHSLILGGGFSSERTIASQGIRDKITSAANRYMTELRRLALPQNQTEHVYRGFRELEESFISQHSFDRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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