Glyma.05g238500

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Report for Sequence Feature Glyma.05g238500

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41444788
stop:	41449159
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g238500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21270.1	AT	ubiquitin fusion degradation 1	JGI	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0006511	GO-bp	ubiquitin-dependent protein catabolic process	JGI	N/A	IEA
KOG1816	KOG	Ubiquitin fusion-degradation protein	JGI	N/A	IEA
PTHR12555	Panther	UBIQUITIN FUSION DEGRADATON PROTEIN 1	JGI	N/A	IEA
PF03152	PFAM	Ubiquitin fusion degradation protein UFD1	JGI	N/A	IEA

Expression Patterns of Glyma.05g238500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g238500 not represented in the dataset	Glyma.05g238500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g238500

Paralog	Evidence	Comments
Glyma.08g045500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g238500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g34630	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g238500

Limit To All Plant Sequences

>Glyma.05g238500.2 sequence-type=transcript locus=Glyma.05g238500 ID=Glyma.05g238500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGCACCAGTTCCTTCCAACTCAACAAAATACTTTTTATATTCTATTCGGCTACCTCGCTCGCTCCTTCTCTGTTCTCTCTCATCTCATCGGATCGATCAAGCATCAGGGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAAATGTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGCCCCAAATCGAAAGTGGTGACAAAATTATCATGCCTCCATCAGCCCTTGACCGTCTAGCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCATTATGGTGGCTTACAACAACAAGAAATATTACATAGATATTATAGAAACTAAGCCTGACACTGCCATAAGCATAATTGAGACTGACTGTGAGGTGGACTTTGCTCCTCCCTTGGATTACAAGGAACCTGAAAAACCCACTGCACCCCTTTCTGCTGGGAAGGCAGCAGTGGCTGCTGAGGTGATCCCTGCTGAAGATGAGCCCAAGTTCAACCCATTTTCTGGAACTGGGAGACGCTTGGATGGAAAACCTTTGAATTATCAGCCTCCTCCAGTTTCCTCTTCAGGGTCTAAGGACCAGAAACCTGATGTTGTCAATTTGCAGTCTTCTACAGCTTCTAGTTCACAAAGTAATGCTCGTCAATCTCAGGGCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAAATTAAAATGGCCTTTTACTTTTAAAGCAAGTTACTTTGTTGATCTATGCATGGATCGATGTCTATTGCAAAAACTTTTATTTATTTATTGTATTATAAGCAGTAGATAGACCAGTAGATGCCACAGAAAATACCTTTGATTACTTGTGAACGAAGCTCTTGACGAGGGTTGCAATCGTGTCTGAATGGTAACATGCTGTGTATAGTGTTTTTGTTTTTGTT

Coding sequences of Glyma.05g238500

Limit To All Plant Sequences

>Glyma.05g238500.1 sequence-type=CDS polypeptide=Glyma.05g238500.1.p locus=Glyma.05g238500 ID=Glyma.05g238500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGCCCCAAATCGAAAGTGGTGACAAAATTATCATGCCTCCATCAGCCCTTGACCGTCTAGCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCATTATGGTGGCTTACAACAACAAGAAATATTACATAGATATTATAGAAACTAAGCCTGACACTGCCATAAGCATAATTGAGACTGACTGTGAGGTGGACTTTGCTCCTCCCTTGGATTACAAGGAACCTGAAAAACCCACTGCACCCCTTTCTGCTGGGAAGGCAGCAGTGGCTGCTGAGGTGATCCCTGCTGAAGATGAGCCCAAGTTCAACCCATTTTCTGGAACTGGGAGACGCTTGGATGGAAAACCTTTGAATTATCAGCCTCCTCCAGTTTCCTCTTCAGGGTCTAAGGACCAGAAACCTGATGTTGTCAATTTGCAGTCTTCTACAGCTTCTAGTTCACAAAGTAATGCTCGTCAATCTCAGGGCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAA

>Glyma.05g238500.2 sequence-type=CDS polypeptide=Glyma.05g238500.2.p locus=Glyma.05g238500 ID=Glyma.05g238500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAGCCCCAAATCGAAAGTGGTGACAAAATTATCATGCCTCCATCAGCCCTTGACCGTCTAGCATCTCTGCATATTGATTACCCAATGTTGTTTGAACTCCGTAATGATGCTGCCGAGCGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCATTATGGTGGCTTACAACAACAAGAAATATTACATAGATATTATAGAAACTAAGCCTGACACTGCCATAAGCATAATTGAGACTGACTGTGAGGTGGACTTTGCTCCTCCCTTGGATTACAAGGAACCTGAAAAACCCACTGCACCCCTTTCTGCTGGGAAGGCAGCAGTGGCTGCTGAGGTGATCCCTGCTGAAGATGAGCCCAAGTTCAACCCATTTTCTGGAACTGGGAGACGCTTGGATGGAAAACCTTTGAATTATCAGCCTCCTCCAGTTTCCTCTTCAGGGTCTAAGGACCAGAAACCTGATGTTGTCAATTTGCAGTCTTCTACAGCTTCTAGTTCACAAAGTAATGCTCGTCAATCTCAGGGCAAGCTTGTGTTTGGGTCAAATGCTAACCGTACTAAAGAGACAGGAAAGGCGAAAGAGTCAAAACCAGAGCCACCTAAAGAGAAAGAAGAGCCGAAATTTCAACCTTTTTCAGGGAAGAAGTATTCTTTACGGGGTTAA

Predicted protein sequences of Glyma.05g238500

Limit To All Plant Sequences

>Glyma.05g238500.1.p sequence-type=predicted peptide transcript=Glyma.05g238500.1 locus=Glyma.05g238500 ID=Glyma.05g238500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFDGYGYHGTSFEQIYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNDAAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVKVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPDTAISIIETDCEVDFAPPLDYKEPEKPTAPLSAGKAAVAAEVIPAEDEPKFNPFSGTGRRLDGKPLNYQPPPVSSSGSKDQKPDVVNLQSSTASSSQSNARQSQGKLVFGSNANRTKETGKAKESKPEPPKEKEEPKFQPFSGKKYSLRG*

>Glyma.05g238500.2.p sequence-type=predicted peptide transcript=Glyma.05g238500.2 locus=Glyma.05g238500 ID=Glyma.05g238500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFDGYGYHGTSFEQIYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNDAAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVKVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPDTAISIIETDCEVDFAPPLDYKEPEKPTAPLSAGKAAVAAEVIPAEDEPKFNPFSGTGRRLDGKPLNYQPPPVSSSGSKDQKPDVVNLQSSTASSSQSNARQSQGKLVFGSNANRTKETGKAKESKPEPPKEKEEPKFQPFSGKKYSLRG*

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