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Report for Sequence Feature Glyma.05g238100

Feature Type:gene_model
Chromosome:Gm05
Start:41429066
stop:41430693
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g238100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01670.1AT nudix hydrolase homolog 17 JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0016818GO-mf hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides EnsemblGenomesN/AIEA
KOG2839 KOG Diadenosine and diphosphoinositol polyphosphate phosphohydrolase JGI N/AIEA
PTHR12629Panther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE JGI N/AIEA
PF00293PFAM NUDIX domain JGI N/AIEA
PWY-5381SoyCyc9 pyridine nucleotide cycling (plants) Plant Metabolic Network ISS
GN7V-55761SoyCyc9-rxn Mn2+-dependent ADP-ribose/CDP-alcohol diphosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g238100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g238100
ParalogEvidenceComments
Glyma.08g045200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g238100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34670 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g238100
>Glyma.05g238100.2 sequence-type=transcript locus=Glyma.05g238100 ID=Glyma.05g238100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTGTTTCCCTAATTTACTCGGTTATTATAATGTCCATCTCCGCAGTTGCATACCTTATAGATATAAAGAAGACATAGATGGTAAAATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAAACAATTTAATCTAGGTAGGCCTAGGTCAGTTTGTCAATATTTTGTATCTTCATAAATTAAGAGTTGCTATAGAGAGGATTGATTAAGGGAGAGGAACAGAATTGTAGAGAAGGATGGAGTTGCAATTTTTATGCAATTCAAATTTACACGCTTATATATACAACTTACGAGTAGACTTCCAAGAGTTAAAATAATTTCGTTTTCAAGTCGTACGTTCTCCTTGTGTCTGTCTGTCTTATGGTTTATCAAACATATACTCCGAATTTTGTAAACACGATGCACTCGAGTGTGAATCCAGCAATGATCAATGAAGTAC
Coding sequences of Glyma.05g238100
>Glyma.05g238100.1 sequence-type=CDS polypeptide=Glyma.05g238100.1.p locus=Glyma.05g238100 ID=Glyma.05g238100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTGCTTGGTATCTCGCTCAGGAAGGGAATTGCAGAGGTACAACAACATGGGTGGCCGGCAAGTTGTTGGTTGCATACCTTATAGATATAAAGAAGACATAGATGGTAAAATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAA

>Glyma.05g238100.2 sequence-type=CDS polypeptide=Glyma.05g238100.2.p locus=Glyma.05g238100 ID=Glyma.05g238100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAACGAATTGGAAGTGCTAGTGGTTAGTTCACAGAAAGGTCGAGGATTGATGTTCCCAAAGGGAGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGTAGGGAATCCCTTGAAGAAGCAGGAGTATTGGGAATCATTGAGAGTGAACTAGGACAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATACATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATATTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATATAGCATTGGATGATTCTTTAAGTTTTTAA
Predicted protein sequences of Glyma.05g238100
>Glyma.05g238100.1.p sequence-type=predicted peptide transcript=Glyma.05g238100.1 locus=Glyma.05g238100 ID=Glyma.05g238100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MACLVSRSGRELQRYNNMGGRQVVGCIPYRYKEDIDGKMSNELEVLVVSSQKGRGLMFPKGGWELDESVEEAACRESLEEAGVLGIIESELGQWNFISKRYGIYYEGHMFPMFVKEQLDTWPEKNLRRRIWMTVAEAREVCQHWWMKEALDILVQRIVSSQQRKEDIALDDSLSF*

>Glyma.05g238100.2.p sequence-type=predicted peptide transcript=Glyma.05g238100.2 locus=Glyma.05g238100 ID=Glyma.05g238100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNELEVLVVSSQKGRGLMFPKGGWELDESVEEAACRESLEEAGVLGIIESELGQWNFISKRYGIYYEGHMFPMFVKEQLDTWPEKNLRRRIWMTVAEAREVCQHWWMKEALDILVQRIVSSQQRKEDIALDDSLSF*






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