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Report for Sequence Feature Glyma.05g237500

Feature Type:gene_model
Chromosome:Gm05
Start:41383632
stop:41394607
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g237500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18290.1AT zinc finger protein-related JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1940 KOG Zn-finger protein JGI N/AIEA
PTHR21319Panther RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 JGI N/AIEA
PF01814PFAM Hemerythrin HHE cation binding domain JGI N/AIEA
PF05495PFAM CHY zinc finger JGI N/AIEA

Expression Patterns of Glyma.05g237500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g237500
ParalogEvidenceComments
Glyma.08g044700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g237500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34730 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g237500
>Glyma.05g237500.1 sequence-type=CDS polypeptide=Glyma.05g237500.1.p locus=Glyma.05g237500 ID=Glyma.05g237500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCCCGAATTCCGTCAACAAGGTTGACTCCTCCTCGGTTCTCAATGGCGGCTTGAAGTGCTCCAAACCGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAAGCGATTCGGAATGAGCTTGACGCGCTGCACCGATTGGCCGTCGCATTCGCCACCGGCAACCGCTCCGACATTAAGCCGCTCTCCGGCCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTGCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAGCACAAGGGTGAAAGCAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCCATCAATAATGTTGAAAGTTTTCCAAAAGAGTTGGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAGGCATCCTTAGTGTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCTGAATTTCTACCGTGGCTTTCAGCATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCAGAGGAAAAACTCCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGAAGAAGTAGCATTAACACAGTTGAAACTTGTGCAGATCATTCTCAAGTTCAATGTAGTTCTAGGGCATTAACCCATCAGCTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGATAGATGTTTCTGATACCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAGTGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACTAGAAAGATACAGCACTCTGAAGATTTTACTAATCTATCTGCTTTTAACGAAAGATTTCAATTCATAGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCGTCTAATTCAGATGTTGAATTTTATTCCAAGTTATGCATACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGACGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTTGTCACACTCTTCTGTGGATGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGTTCGGCCATCCTGTGCTTGTGCATCTGCATTATCTAATAGACATTGCTCGGTATTAGCTGAATCAGGTGGGAACAAAAGATCAGTCAAGCGCAACATATTGGAGTCGCACAAAAATGAAGATCTACCTGAAACTTCAGAGACTGAAAATATTCAGAAACAATGTTGTAGTGCACGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGTAGTAACAATTTAGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGGTCCTTGTCTTTCTGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGCAATGTTGGATCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTAGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAAGCCTTGCAGATGACGCATATGTCCGACAATTTAAGTGAAAGTAATTTTGGAACCTCTGATGCCAATACTAGTGATGATATCAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCTATAAGAGTGACCCTGGATCAGCATCTTTTTAGAGAAGAATGCGAACTGTGGCCATTGTTTGGCAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACGTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATATATGGAAGCAGGCAACTAAGAACACTATGTTCAACGAATGGCTTAGTGAATGCTGGAAAGAGAGTCGAGTGTCTACAGCACAGACAGAAACGTCAGATCACAGCACTTCTCGGAGAGGTGCTGAATATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGCAAGGTATATCGAGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTTATCTGAAGGATCATCTAACAGTGTAGAAATAGAAGGACTCTCACCATCATTTCAGGACCCAGAGGAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGGGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCTATGGATAGAAAAGCAACATCAGAAATTATGTGTATGCGCTGCCTGAATATACAGCCAATAGGGCCCATATGCATGACACCTTCATGTAATGGGTTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACCTGTTCACTTCAAGTGCCACAGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACTTGTAACCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAAGGACCGCTGTCAGGACATACTCTGCCATGACTGTAATCGGAAGGGCACTTCACGCTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAG
Predicted protein sequences of Glyma.05g237500
>Glyma.05g237500.1.p sequence-type=predicted peptide transcript=Glyma.05g237500.1 locus=Glyma.05g237500 ID=Glyma.05g237500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASPLDGGGVAVLPNSVNKVDSSSVLNGGLKCSKPESPILIFLFFHKAIRNELDALHRLAVAFATGNRSDIKPLSGRYHFLSSMYRHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSINNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSASISPDESQDLRNCLIKIVPEEKLLQKVVFTWMEGRSSINTVETCADHSQVQCSSRALTHQLEKVNCACESTTTGKRKHSGSMIDVSDTTGTHPIDEILLWHSAIKKELSEIAVETRKIQHSEDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCIHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKTFQRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLSDIEENIVRPSCACASALSNRHCSVLAESGGNKRSVKRNILESHKNEDLPETSETENIQKQCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFCSSAPSLNSSLFIWETESSSCNVGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQMTHMSDNLSESNFGTSDANTSDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDIWKQATKNTMFNEWLSECWKESRVSTAQTETSDHSTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIEGLSPSFQDPEEHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEIMCMRCLNIQPIGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCNHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCNRKGTSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS*






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