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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33760.1 | AT | tRNA synthetase class II (D, K and N) family protein | JGI | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | EnsemblGenomes | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| KOG2411 | KOG | Aspartyl-tRNA synthetase, mitochondrial | JGI | N/A | IEA |
| PTHR22594 | Panther | ASPARTYL/LYSYL-TRNA SYNTHETASE | JGI | N/A | IEA |
| PTHR22594:SF5 | Panther | ASPARTATE--TRNA LIGASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00152 | PFAM | tRNA synthetases class II (D, K and N) | JGI | N/A | IEA |
| PF01336 | PFAM | OB-fold nucleic acid binding domain | JGI | N/A | IEA |
| PF02938 | PFAM | GAD domain | JGI | N/A | IEA |
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Glyma.05g236700 not represented in the dataset |
Glyma.05g236700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g043900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g34820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g236700.1 sequence-type=CDS polypeptide=Glyma.05g236700.1.p locus=Glyma.05g236700 ID=Glyma.05g236700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTTGTTCCTTAAAGCTTTGCCTTTGATGGCCTTCCGCACGAGGCCATCTCTGGTGTTTCTGGGCAGAGTTTCCAACACCATTCCATTGTCACTTTCCAGAACCAGAACCGTGTATTCCGCTTCTGCTTCAACACAACCACCTCCTTCTGCTTGTGCTTCTGAAACACTCACTTCCAGTGCTAAACCACCTTTGCCCCTCAGTGAACCCCTTGAGTGGGTCAACAGGACTGCATTTTGTGGCGAATTGTCTTCAAATGATGTGGGAAAAAGTGTCCAGCTTTGTGGGTGGGTTGCCCTTCACAGGGTCCATGGTGGGCTCACATTTCTTAATCTCAGAGACCACACTGGCATTGTTCAGGTTACAACCCTTCCTAATGAATTTCCAGATGCCCATTCTGCTATCAATGATCTGAGACTTGAGTACGTGGTTGCCATTGAGGGTGTTGTCAGGTCTAGGCCAGATGAGTCGATCAACAAGAAGATGCAAACAGGCTTCATCGAGGTTGCTGCAAATAAAGTTCAATTGCTAAACTCTGTAAATTCAAAGTTGCCATTCTTGGTTACTACAGCAGATGATGCAAAAGACTCTCTTAAAGAGGAAATCCGTTTGAGGTATCGATGTCTTGATCTGAGGCGGCAACAAATGAATTTCAACATATTGCTGCGGCATAAAGTGGTTAAACTCATTCGAAGATATCTAGAAGACGTTCATGGTTTTGTTGAGATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCCAGGAACATTCTATGCCTTGCCACAAAGTCCTCAGCTATTTAAGCAAATGCTAATGGTAGCTGGTTTTGATAAATACTATCAGATTGCAAGATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTTAATGAAGAATTGATTAGAAAGGTTTTTCTTGAAATTAAAGGTGTGGAGTTACCTAACCCTTTCCCCAGGCTTACATATGCTGAAGCAATGAGTAGATATGGTTCAGACCGGCCAGATACCAGATTTGATCTTGAGTTAAAAGATGTATCTGACATTTTCTCAGGGTCTTCCTTCAAGGTTTTCTCTGATTCCTTGGAGAGTGGGGGAGTTATCAAAGTGTTATGTGTACCTTCTGGTACAAAAAAATACTCAAACTCAGCTCTTAAGAAAGGTGATATTTACAATGAAGCACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATGGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTAGAGGGAATTTGTTAAGGCGATGCTCTTCAGGACCAAGTGATCTGATTCTATTTGCAGTGGGTCATCATGCGTCTGTAAATAAAACTTTAGACCGTCTTAGAGTTTATGTAGCCCATGATCTAGGTTTAATTGACCTTGGCAGGCATTCAATTTTGTGGATAACTGATTTTCCGATGTTTGAGTGGAATGATCCAGAGCAGAGGCTTGAGGCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAATGACCTTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAGGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATGGAGGCATAGCTTATGGGTTGGACAGATTGGTTATGCTGTTGGCGGGGGCTAATTCCATCAGAGATGTCATTGCTTTTCCAAAAACAACCACTGCACAGTGTGCCCTCACGAGATCACCATCTGAGGTGGATCCCCAGCAGCTGAAAGATCTGTCAATTACAACATAG
>Glyma.05g236700.1.p sequence-type=predicted peptide transcript=Glyma.05g236700.1 locus=Glyma.05g236700 ID=Glyma.05g236700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSLFLKALPLMAFRTRPSLVFLGRVSNTIPLSLSRTRTVYSASASTQPPPSACASETLTSSAKPPLPLSEPLEWVNRTAFCGELSSNDVGKSVQLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPNEFPDAHSAINDLRLEYVVAIEGVVRSRPDESINKKMQTGFIEVAANKVQLLNSVNSKLPFLVTTADDAKDSLKEEIRLRYRCLDLRRQQMNFNILLRHKVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPYEDMLMLNEELIRKVFLEIKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLESGGVIKVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNIEGISALVSSMDPTTRGNLLRRCSSGPSDLILFAVGHHASVNKTLDRLRVYVAHDLGLIDLGRHSILWITDFPMFEWNDPEQRLEALHHPFTAPNPEDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLEIVGISMEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSITT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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