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Report for Sequence Feature Glyma.05g236700

Feature Type:gene_model
Chromosome:Gm05
Start:41301540
stop:41310727
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g236700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33760.1AT tRNA synthetase class II (D, K and N) family protein JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG2411 KOG Aspartyl-tRNA synthetase, mitochondrial JGI N/AIEA
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI N/AIEA
PTHR22594:SF5Panther ASPARTATE--TRNA LIGASE, MITOCHONDRIAL JGI N/AIEA
PF00152PFAM tRNA synthetases class II (D, K and N) JGI N/AIEA
PF01336PFAM OB-fold nucleic acid binding domain JGI N/AIEA
PF02938PFAM GAD domain JGI N/AIEA

Expression Patterns of Glyma.05g236700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g236700
ParalogEvidenceComments
Glyma.08g043900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g236700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g34820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g236700
>Glyma.05g236700.1 sequence-type=CDS polypeptide=Glyma.05g236700.1.p locus=Glyma.05g236700 ID=Glyma.05g236700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTGTTCCTTAAAGCTTTGCCTTTGATGGCCTTCCGCACGAGGCCATCTCTGGTGTTTCTGGGCAGAGTTTCCAACACCATTCCATTGTCACTTTCCAGAACCAGAACCGTGTATTCCGCTTCTGCTTCAACACAACCACCTCCTTCTGCTTGTGCTTCTGAAACACTCACTTCCAGTGCTAAACCACCTTTGCCCCTCAGTGAACCCCTTGAGTGGGTCAACAGGACTGCATTTTGTGGCGAATTGTCTTCAAATGATGTGGGAAAAAGTGTCCAGCTTTGTGGGTGGGTTGCCCTTCACAGGGTCCATGGTGGGCTCACATTTCTTAATCTCAGAGACCACACTGGCATTGTTCAGGTTACAACCCTTCCTAATGAATTTCCAGATGCCCATTCTGCTATCAATGATCTGAGACTTGAGTACGTGGTTGCCATTGAGGGTGTTGTCAGGTCTAGGCCAGATGAGTCGATCAACAAGAAGATGCAAACAGGCTTCATCGAGGTTGCTGCAAATAAAGTTCAATTGCTAAACTCTGTAAATTCAAAGTTGCCATTCTTGGTTACTACAGCAGATGATGCAAAAGACTCTCTTAAAGAGGAAATCCGTTTGAGGTATCGATGTCTTGATCTGAGGCGGCAACAAATGAATTTCAACATATTGCTGCGGCATAAAGTGGTTAAACTCATTCGAAGATATCTAGAAGACGTTCATGGTTTTGTTGAGATTGAAACTCCAATTCTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCCAGGAACATTCTATGCCTTGCCACAAAGTCCTCAGCTATTTAAGCAAATGCTAATGGTAGCTGGTTTTGATAAATACTATCAGATTGCAAGATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTTAATGAAGAATTGATTAGAAAGGTTTTTCTTGAAATTAAAGGTGTGGAGTTACCTAACCCTTTCCCCAGGCTTACATATGCTGAAGCAATGAGTAGATATGGTTCAGACCGGCCAGATACCAGATTTGATCTTGAGTTAAAAGATGTATCTGACATTTTCTCAGGGTCTTCCTTCAAGGTTTTCTCTGATTCCTTGGAGAGTGGGGGAGTTATCAAAGTGTTATGTGTACCTTCTGGTACAAAAAAATACTCAAACTCAGCTCTTAAGAAAGGTGATATTTACAATGAAGCACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATGGGAATATTGAAGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAACTAGAGGGAATTTGTTAAGGCGATGCTCTTCAGGACCAAGTGATCTGATTCTATTTGCAGTGGGTCATCATGCGTCTGTAAATAAAACTTTAGACCGTCTTAGAGTTTATGTAGCCCATGATCTAGGTTTAATTGACCTTGGCAGGCATTCAATTTTGTGGATAACTGATTTTCCGATGTTTGAGTGGAATGATCCAGAGCAGAGGCTTGAGGCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAATGACCTTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAGGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATGGAGGCATAGCTTATGGGTTGGACAGATTGGTTATGCTGTTGGCGGGGGCTAATTCCATCAGAGATGTCATTGCTTTTCCAAAAACAACCACTGCACAGTGTGCCCTCACGAGATCACCATCTGAGGTGGATCCCCAGCAGCTGAAAGATCTGTCAATTACAACATAG
Predicted protein sequences of Glyma.05g236700
>Glyma.05g236700.1.p sequence-type=predicted peptide transcript=Glyma.05g236700.1 locus=Glyma.05g236700 ID=Glyma.05g236700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLFLKALPLMAFRTRPSLVFLGRVSNTIPLSLSRTRTVYSASASTQPPPSACASETLTSSAKPPLPLSEPLEWVNRTAFCGELSSNDVGKSVQLCGWVALHRVHGGLTFLNLRDHTGIVQVTTLPNEFPDAHSAINDLRLEYVVAIEGVVRSRPDESINKKMQTGFIEVAANKVQLLNSVNSKLPFLVTTADDAKDSLKEEIRLRYRCLDLRRQQMNFNILLRHKVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPYEDMLMLNEELIRKVFLEIKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLESGGVIKVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNIEGISALVSSMDPTTRGNLLRRCSSGPSDLILFAVGHHASVNKTLDRLRVYVAHDLGLIDLGRHSILWITDFPMFEWNDPEQRLEALHHPFTAPNPEDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLEIVGISMEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSITT*






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