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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G02760.1 | AT | Class II aaRS and biotin synthetases superfamily protein | JGI | N/A | IEA |
GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | JGI | N/A | IEA |
GO:0006427 | GO-bp | histidyl-tRNA aminoacylation | EnsemblGenomes | N/A | IEA |
GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
GO:0032543 | GO-bp | mitochondrial translation | EnsemblGenomes | N/A | IEA |
GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | JGI | N/A | IEA |
GO:0004821 | GO-mf | histidine-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
GO:0016841 | GO-mf | ammonia-lyase activity | JGI | N/A | IEA |
KOG1936 | KOG | Histidyl-tRNA synthetase | JGI | N/A | IEA |
PTHR11476 | Panther | HISTIDYL-TRNA SYNTHETASE | JGI | N/A | IEA |
PF00221 | PFAM | Aromatic amino acid lyase | JGI | N/A | IEA |
PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | N/A | IEA |
PF03129 | PFAM | Anticodon binding domain | JGI | N/A | IEA |
Glyma.05g234900 not represented in the dataset |
Glyma.05g234900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.08g042400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma05g35021 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g234900.1 sequence-type=CDS polypeptide=Glyma.05g234900.1.p locus=Glyma.05g234900 ID=Glyma.05g234900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGAAGCTTCCGTAACGGTTGGAGGCAAGGCTTCTTCTCTCTCTTCCTCCTCCGTCTTCGCCGTCGCCACGGGCCTCGCTCACGTGCGGATCGACTCATCCGCGCTCGATAGACTCTCCAAGACCACCGCCACGGAAACGACGTCGTCTCAGCACCGCATCTGCGTCCCCGATTTCCTAACCCTAGAGGAATCCCGCGCCTTCCTTCTGGTCCTCCTCAACAACCTCGTCCTCTCCAATGCCCCCTCCCGCATTCCCCTCCTCCTATCCCAAACCCTCAATTCCAATCCTCCCACCTTCCAATTCCTAGATGCTGACGTCACCCAACCAGACCTTCTCACCTCTTCCACGCTGCTCGCTGTTTCCGCCATTCTCGACCGCCAGTCCGCCGCGCTCTCCGCCTTCGCCGACGTCGCCGCCGCCTTCTCCTGTGAGGCCTTGAAGGCCGATATAACGCCCTTCAATTTGATGGATTCCGGCGACGGACACGCCTCCAAGGCCGAGGTCGCCGTCGCCGCCGACATGCGGGTTCTGCTCAACGGATCCAAATCCGTCGGCAAGGAGAATATTCGATCCGTCGCGAGGGTTCCCAAGGTTCACGGGAGTGTGAGGGAGCAGGCCAAAGCCGTGCACTCGAGAATGCGTGTTGAGTTGAATTCGGGGGTTAAGGGTGTTGTTGTTGGGAGTGAGGAAGCTGTATGCACTGTGCTGTTGCCGTTGGCTGCAGCACTGAAAGAACTTGGTGAGTGTAGTTTCGCACGTGCCAAGAGTAATTCGGAGGTTATTGGTGGTGATGGTTTGAGATTGGGCATTGGGGAGGTGTTTGGGAAGGAATGCCCCACTCAGGATGGTTTGAGCAGTGGTTTAAATAAGGCTGTGAACTTGTTTCTGGGAAAGGAGTATGGTAAGTTTGCACACGAGGTCTTTGTGATGTTTGGACTTGTGTGGAAAGTTGTGGTGTGGGAAGCTGTGACGGCGGTTGCGGTGCTTGAGGCTGCTGAGTTGAATGATGTGATCCTAGGTGTCAAGGAAATGAAAGTAGAGGGGAACACGAAAGTAGAGGAGAAGAAGAAGAAGAAGAAAGTTGTTTTGGGGAAAGGGACTAGCTCGATTTTGGCATTGATCAAGGAGAGGTTACTGAGTGGTCGAGAGATAGCTTTAGGGACTTGGGTGGCAGATTTTCTATCACTTTTGGATTTGGCTAAACCTGAGTTTAATGAATTTTTATTGAAAGTAAAGGATGTTGTAGAGAGCAATGAAAGCAGGAGATTACCCAAGATTCCTAAGGGGACTCGTGATTTTGCTAAAGAACAAATGACAATTAGAAAGAAAGCTTTTCTAATAATAGAAGAAGTTTTTGAGAGGCATGGCGCAACTGCCTTAGATACTCCTGTTTTTGAATTGCGAGAAACTCTCATGGGAAAATATGGAGAAGATTCGAAGTTGATTTATGATCTTGCTGACCAGGGTGGGGAGCTTCTTTCTTTGAGGTATGACTTGACAGTTCCATTTGCTAGGTTTGTGGCTATGAATGGTCTGACATCTTTCAAAAGGTACCAAATAGCCAAGGTTTACAGAAGGGATAACCCATCTAAGGGAAGATACCGTGAATTTTATCAATGCGACTTTGATATTGCTGGTACTCCTACTCCATCTGAAATTATGGGTCCGGACTTTGAGGTTGTTAGGATTTTGACTGAACTACTTGATGAGCTGGACATTGGGGAATATGAGATAAAGTTGAATCATAGAAAGTTACTGGATAGCATGATGCAAATATGTGGTGTACCTCCTGAAAAGTTTAGAACAATATGTTCAAGCATTGACAAGTTAGACAAACAGTCTTTTCAACAGATAAGAAAAGAAATGGTGGAAGAAAAAGGATTAACTGCTGAGACAGCTGACAGAATTGAAACTTTTGTTAAAGAAAAAGGATCTCCTTTAGCATTATTATCTAAATTTAAACAAGAGGGTAGTGATTTCTCAAAACACAAAGGAGCTTCTGAAGCATTGAAAGAGCTGGAAATTTTATTTATAGCTCTGGAAAAATCAAAACGCATTGATAAAGTGGTTTTTGACTTGAGTCTTGCCAGAGGTCTGGATTATTACACTGGAGTTATATTTGAAGCTGTTTTTAAAGGAGGCACTCAGGTTGGTTCAATTGCTGCCGGTGGCCGATATGATAACCTTATAGGGATGTTTGGCTCAAGGTCAGTGCCTGCAGTTGGTGTAAGTCTGGGAATTGAGAGAGTATTTGCCATAATGGAGCAACAACAGAAGAATCTGAACCAGATGGCTCGTCCGACCAAGACAGAAGTCTTAGTGAGCATAGTGGGGAATGACTTTACACTTGCTGCAGAGCTAGCAGGAGAACTGTGGGATGCTAGGGTGAAAGCAGAATTCTTGGTCAATAAAAGAAGAGCGAAACACTTCGAATATGCAAAAGAATCAAGGATCCCTTGGATGGTACTTGTTTATGAGCAGGAAATAAAAGAAGGCGTGGTGCAATTGAAAAATCTCGAGGCCAACATCGATATTAAGATTTCTAGAGCAGAATTTGTGGAGGAACTTCGGAGACGGTTATACCCTTAA
>Glyma.05g234900.1.p sequence-type=predicted peptide transcript=Glyma.05g234900.1 locus=Glyma.05g234900 ID=Glyma.05g234900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAEASVTVGGKASSLSSSSVFAVATGLAHVRIDSSALDRLSKTTATETTSSQHRICVPDFLTLEESRAFLLVLLNNLVLSNAPSRIPLLLSQTLNSNPPTFQFLDADVTQPDLLTSSTLLAVSAILDRQSAALSAFADVAAAFSCEALKADITPFNLMDSGDGHASKAEVAVAADMRVLLNGSKSVGKENIRSVARVPKVHGSVREQAKAVHSRMRVELNSGVKGVVVGSEEAVCTVLLPLAAALKELGECSFARAKSNSEVIGGDGLRLGIGEVFGKECPTQDGLSSGLNKAVNLFLGKEYGKFAHEVFVMFGLVWKVVVWEAVTAVAVLEAAELNDVILGVKEMKVEGNTKVEEKKKKKKVVLGKGTSSILALIKERLLSGREIALGTWVADFLSLLDLAKPEFNEFLLKVKDVVESNESRRLPKIPKGTRDFAKEQMTIRKKAFLIIEEVFERHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELLSLRYDLTVPFARFVAMNGLTSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGTPTPSEIMGPDFEVVRILTELLDELDIGEYEIKLNHRKLLDSMMQICGVPPEKFRTICSSIDKLDKQSFQQIRKEMVEEKGLTAETADRIETFVKEKGSPLALLSKFKQEGSDFSKHKGASEALKELEILFIALEKSKRIDKVVFDLSLARGLDYYTGVIFEAVFKGGTQVGSIAAGGRYDNLIGMFGSRSVPAVGVSLGIERVFAIMEQQQKNLNQMARPTKTEVLVSIVGNDFTLAAELAGELWDARVKAEFLVNKRRAKHFEYAKESRIPWMVLVYEQEIKEGVVQLKNLEANIDIKISRAEFVEELRRRLYP*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||