SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g234100

Feature Type:gene_model
Chromosome:Gm05
Start:41123596
stop:41127315
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g234100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73850.1AT Protein of unknown function (DUF1666) JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
PTHR10759Panther 60S RIBOSOMAL PROTEIN L34 JGI N/AIEA
PTHR10759:SF1Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF07891PFAM Protein of unknown function (DUF1666) JGI N/AIEA

Expression Patterns of Glyma.05g234100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g234100 not represented in the dataset
Glyma.05g234100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g234100
ParalogEvidenceComments
Glyma.08g041400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g234100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g35105 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g234100
>Glyma.05g234100.1 sequence-type=CDS polypeptide=Glyma.05g234100.1.p locus=Glyma.05g234100 ID=Glyma.05g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGCTATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCTCTAGCCCTTTCCAGCTTCTCTTCCTCATTCTCTTCTCCTCTGCCGTTTTCCTTGTCACCTTCTTAACCTTCACAGGCAGATTCCCCTTAATCCAAAGGGATCAAGAATATGAATATGTGTATACCGAGGATGAAGAAGAAGAGGAAGAAGAAACTCAAGAAGGGTATTCTTGTGTTGATTCTACTGACAGATTAGAAGTAACTTGTGGCAAGGAGACTCGTGTGTTTCTGCACAATGAGGGGCATCAGAGGACTCATTCTTATTCGGAAGAATTCATAAGCCCCGAGGAGAGCTTGAATGAAGAGTCAGAAGAAAAGCATTATTCTGAAACGTTGTCTCTCCATAACTCAGCACAAGTTTCTGACTTCGAAAATGAAGAAGCGGAAACGGTTCAAGTAGACTTTCCAGCAAGAGATCCCGATTCTGCCCAGGTTGAAAGAAGGACCACCTCTCCCATCAACCTCACCGCATACAAAAGAAACAAAAACCGTGACGACGATCATGTTAGCGTTGAAATTATTAAAAACAAGAAGGTGCAAGAGACAAACCTTGCAAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAATTGCAGAGTAAGAAGTTAATGATTGAAGAGAGGGATGATGAGTCCTCGAAATGGAAGAGCTCCATCATTGGCAGGGATTCTGATACTGAAGACGCATTTTCTTCTTCATCAAGAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAATATGATGAAGAGATGGCAATCCTAGACAGAATTAGTGCACAGAAACATCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCAGAGCGTATTGTGTACAAGTTTCAAAATGTAAATAAAAAGCCCGCTGAGGTTGGTCACAACCCATATCGTGAACTAGAGGCTGCATATGTTGCACAAATTTGTTTAACATGGGAAGCCCTTAGTTGGAACTACAAAAATTTTCGTTCCAAACATGCCTCACGCCAGGATCATGATACCGGTTGTTCTGCCACCGTTGCACAGCAATTCCAGCAATTTCAGGTTTTGTTACAGAGATACATTGAGAATGAGCCTTATGAGCATGGCAGGAGACCTGAGATCTTTGCTAGAATGAGGCTTTTGGCACCAAACTTGCTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCAGAAGGATGGTGGTTTTCAATGCAAAATATCATCAGCTTCATTTCTAAAGATAATGGAGGACGGGATCAAGACATTCATGAATTTTCTGAAGAATGATAAAGAGAAACCCTGTCAGATCCTTGCAGCCTGCTTTAGGAGAAACCAAAGAGGCACGGTTGATCCAGCACTACTCCGACTAATGAAGAAGGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATCTTAACCATGCAGGGAAATGCTTGAGGAAGAGAAAGTTAAAGGTGGAAAAGGATATGGATATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCAAGGGTTTTAAGAATGCATGACTTAAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGCAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGA
Predicted protein sequences of Glyma.05g234100
>Glyma.05g234100.1.p sequence-type=predicted peptide transcript=Glyma.05g234100.1 locus=Glyma.05g234100 ID=Glyma.05g234100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLCPKEEALVKLFYNVSSPFQLLFLILFSSAVFLVTFLTFTGRFPLIQRDQEYEYVYTEDEEEEEEETQEGYSCVDSTDRLEVTCGKETRVFLHNEGHQRTHSYSEEFISPEESLNEESEEKHYSETLSLHNSAQVSDFENEEAETVQVDFPARDPDSAQVERRTTSPINLTAYKRNKNRDDDHVSVEIIKNKKVQETNLARDERFFVFASTQLQSKKLMIEERDDESSKWKSSIIGRDSDTEDAFSSSSRRSCPKWESYTLFQKYDEEMAILDRISAQKHHETESLRSIQMSPRSMSERIVYKFQNVNKKPAEVGHNPYRELEAAYVAQICLTWEALSWNYKNFRSKHASRQDHDTGCSATVAQQFQQFQVLLQRYIENEPYEHGRRPEIFARMRLLAPNLLLVPEYQDLEEDQKDGGFQCKISSASFLKIMEDGIKTFMNFLKNDKEKPCQILAACFRRNQRGTVDPALLRLMKKVNQKKRVKVKDLNHAGKCLRKRKLKVEKDMDILMALIDLKVVSRVLRMHDLSEEQLHWCEEKMSKVRIMEGKLQRDYSTPLFFPSH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo