SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g226400

Feature Type:gene_model
Chromosome:Gm05
Start:40480968
stop:40482410
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g226400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29140.1AT MATE efflux family protein JGI N/AIEA
GO:0006855GO-bp drug transmembrane transport EnsemblGenomesN/AIEA
GO:0006855GO-bp drug transmembrane transport JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity JGI N/AIEA
GO:0015297GO-mf antiporter activity EnsemblGenomesN/AIEA
GO:0015297GO-mf antiporter activity JGI N/AIEA
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI N/AIEA
PTHR11206Panther MULTIDRUG RESISTANCE PROTEIN JGI N/AIEA
PTHR11206:SF38Panther JGI N/AIEA
PF01554PFAM MatE JGI N/AIEA

Expression Patterns of Glyma.05g226400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g226400
ParalogEvidenceComments
Glyma.08g033200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g226400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g35900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g226400
>Glyma.05g226400.1 sequence-type=CDS polypeptide=Glyma.05g226400.1.p locus=Glyma.05g226400 ID=Glyma.05g226400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGAGCAGCAGAAAAGGAGAGGCTGCAGTGTTGGAGCATAAGGAGAGAAGTGAAAGCGGTGGTGGAGCTGGCGTTTCCGATAGGAATAACGGCGTTGATATTCTACGCGCGTTCCATGGTATCGATGCTGTTCCTGGGACACCTGGGAGAGTTAGAACTGGCAGCAGGGTCCCTAGGAATGGCGTTCGCGAACATCACAGGTTATTCGGTGCTGTCGGGTCTAGCACTTGGGATGGAACCGATGTGCTCGCAAGCCTTCGGAGCAAAACGCGTGAAGGTGTTGTCGTTGACCCTCCACCGCTGCGTCATGTTCCTATTAGTCTGCTCCATCCCAATATCACTCCTTTGGCTCAACATGTCCAGCATCCTCCTTCTCTTGCACCAGGACCCAAACATCACCCTCATGGCCCACACCTACCTCATCTTCTCCCTCCCTGACCTCCTCACCCACTCCTTCCTTCACCCAATCCGCATTTACCTTCGCGCCCAGGGCGTCACCCACCCGGTCACCTTAGCCTCCCTCGCCGGAACCCTCCTCCACCTCCCCTTCAACTACCTCCTCGTCACGCGCCTCCGCCTCGGCCTCGCCGGTGTCGCCGCTGCCTCCGCCGCTTCCAACCTCTCCATCCTCCTCTTCCTCGGAGCCGCCGTTTGTTTCACCGGCCTGCACTGCGCCGCCCCGAGCCGAGACTGTTTCAGCGGCTGGAAGCCGCTGCTTCGGCTCGCCGCGCCGAGCTGCGTCTCTGTTTGCTTGGAGTGGTGGTGGTATGAGATCATGATCATTCTTTGCGGGATTCTCGTGGACCCCACCGCTACCGTTGCTTCCATGGGAATACTCATTCAAACCACTTCACTCATCTATGTTTTCCCCTCCTCGCTTGGTTTCGCGGTTTCCACACGCGTCGGGAACGAGCTCGGAGCGAATCGTCCTTCTCGAGCCAAATTATCCGCGGTGGTTTCTGTTTTTCTCGCCGCGATTATGGGGTTCTCGGCGATGTTTTTCGCCGTCGGGATGCGGCGGCGGTGGGGGAGGATGTTCACCGCCGACGAGGACATAATAAGGATCACGTCGATGGCGCTGCCGATCCTCGGGATTTGTGAACTCGGGAACTGTCCGCAGACGGTGGGGTGCGGCATCGTTAGAGGGATGGCGCGGCCGAACACGGCGGCCAATGTGAACCTGGGCGCGTTCTATTTGGTCGGGATGCCCGTGGCGGTGGGGCTTGGGTTCTGGTTTGACGTTGGGTTCTGTGGGCTGTGGCTGGGCCTGCTCTCGGCCCAGGTGTGTTGCGCGGGACTTATGTTGTATGTGATTGGGACCACCGATTGGGAGTTTGAAGCCCATCGGGCCCAGTGGCTGACGTTGGTCGAAGATGGAGTGATGGACGGACAGAAACAGCCGTTGACAAGCGTTGTTACCGAGGCTCCCTCGACTTGA
Predicted protein sequences of Glyma.05g226400
>Glyma.05g226400.1.p sequence-type=predicted peptide transcript=Glyma.05g226400.1 locus=Glyma.05g226400 ID=Glyma.05g226400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGAAEKERLQCWSIRREVKAVVELAFPIGITALIFYARSMVSMLFLGHLGELELAAGSLGMAFANITGYSVLSGLALGMEPMCSQAFGAKRVKVLSLTLHRCVMFLLVCSIPISLLWLNMSSILLLLHQDPNITLMAHTYLIFSLPDLLTHSFLHPIRIYLRAQGVTHPVTLASLAGTLLHLPFNYLLVTRLRLGLAGVAAASAASNLSILLFLGAAVCFTGLHCAAPSRDCFSGWKPLLRLAAPSCVSVCLEWWWYEIMIILCGILVDPTATVASMGILIQTTSLIYVFPSSLGFAVSTRVGNELGANRPSRAKLSAVVSVFLAAIMGFSAMFFAVGMRRRWGRMFTADEDIIRITSMALPILGICELGNCPQTVGCGIVRGMARPNTAANVNLGAFYLVGMPVAVGLGFWFDVGFCGLWLGLLSAQVCCAGLMLYVIGTTDWEFEAHRAQWLTLVEDGVMDGQKQPLTSVVTEAPST*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo